| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0200 |
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| Symbol | |
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| ID | 7971409 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 207798 |
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| End bp | 210524 |
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| Gene Length | 2727 bp |
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| Protein Length | 908 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644790803 |
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| Product | type VI secretion ATPase, ClpV1 family |
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| Protein accession | YP_002942129 |
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| Protein GI | 239813219 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
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| TIGRFAM ID | [TIGR03345] type VI secretion ATPase, ClpV1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGATA TCCGCCGCGT CTCCCTTTTC TCGAAACTCA ATCCGATGCT CTACAAGGCA
TTGGAGACCG CCACCGCCTT CGCCAAGCTG CGCGGCAATG CCTACGTGGA GCTGGTGCAC
TGGCTGCACC AGATCCTGCA GTTGCAGGAC AGCGACCTGC TGCGCATCGT CAAGCGCGCC
GGCCTCAACC TCGATGCGGT CGAGCAGGAC CTGGTGCGTG CGCTCGACCG GCTGCCGCAC
GGCGCCACCT CGATCAGCGA CATCTCGGAG CACGTCGACA ACGCCGTCGA GCGCGCCTGG
GTCTATGCGA GCCTGCGCTT CGAGGCCACG TCGATCCGCG GTGCCTACCT GCTCGCGGGC
ATCGTCAAGA CGCCGGGGCT GCGCCAGGTG CTCTCGGGCA TCTCGCGCGA GTTCGACAAG
ATCGTGCCCG ACGTGCTCGT CGCGCAGCTT CCCGCATGGA CCGAGGGCTC GCCCGAGGAC
GACTTCGACG CCGCGGCCGC GCCGGGGCAA GCCGCCCCGG CGGAGTCCCA CCAGGGCGAC
GGCGCCGCCG CGGGCGGCTC GGCGCTGGCC AAGTACGCGA GCGACCTCAC GGCCAAGGCG
CGTGCGGGCG AGCTCGACCC GGTCTACGGC CGCGACGACG AGATCCGCCA GATCATCGAC
ATCCTGATGC GCCGGCGGCA GAACAATCCG CTGCTCACGG GCGAGGCGGG CGTGGGCAAG
ACCGCGGTGG TCGAAGGCCT GGCCTCGCGG CTCGCGGCGG GCGACGTGCC GCCCTCGCTC
AAGGACGTGT CGCTGTGGGT GCTCGACCCC ACGCTGCTGC AGGCCGGCGC GGGCGTGAAG
GGCGAGTTCG AGCAGCGGCT GCGCCAGGTG ATCGACGAGG TCGAGAAAAG CCCCAAGCCC
ATCGTGCTGT TCGTCGACGA GGTGCACACG CTGGTCGGCG CGGGCGGCAC GGCCGGCACC
GGCGATGCGG CCAACCTGCT GAAGCCGGCG CTTGCGCGCG GGCGGCTTCG CACCATCGGC
GCGACCACCT GGTCCGAGTA CAAGAAGTAC ATCGAGAAGG ACCCGGCGCT CACGCGGCGC
TTCCAGACCA TCCAGGTGCA CGAGCCCACC GAGTCCAAGG CCGTGGTCAT GCTGCGCGGC
ATCTCGGCCG AGCTCGAGAA GCACCATGGC GTGCTCATCC TGGACGCCGC GCTCGAAGCG
GCCGTGAGCC TGTCGCACCG CTACATCCCC GCGCGCCAGC TGCCCGACAA GGCCGTGAGC
CTGCTCGACA CGGCCTGCGC GCGCGTGGCC CTGAGCCAGC ATGCGCTGCC CGCGGCGATC
GAAGACCTGC ATCGCCGCAT CGAGGTGCTG GGCATCGAGT CGGGCATTGC GGGGCGCGAG
GCGGCGATCG GCGTCGGCGA GCACCAGCGC GTGGAAGACA TCGCGGCCCA GGTGGCTGTG
GCACAGGCCG AGCTCGACCT GCTGGAACAG CGGCGTGCGG AAGAAAGCGT GCTCGTGGAG
CGCATCGTGG CGCTGCGCAA GCTGCTCTCG CCCGATGCAG TGCCGGTGCG GGCCGAGGCC
AAAGAGGAAG AGGGCGACGA AGCCGAAGCT CCAGTTGAAG CCGAGCCCGC TCCGCCGGAA
CCCGAAAGAA CACCCGAAGA GATCCGCGCC GAACTCGACC AGGCGCAGGA CAAGCTCGTG
CAGCTGCAGG GCGAATCGCC GCTCATCCTG GCAGCCGTCG ACGCGCAGGC CGTTGCCACC
GTGGTGGCCG ACTGGACCGG CATTCCGATC GGCCGCATGG TGCGCGACGA TGCGCAGTCG
GTGCTGCGCC TCGGCGAGAT CCTCTCGGCC CGCGTGGTGG CCCAGCCCGA CGCGCTGGAG
ACCATCTCGC GGCGCATCCG CACCGCGCGC GCGCGGCTCG ACAACCCGAA CAAGCCGGTG
GGCGTGTTCC TGCTGTGCGG CCCCTCGGGC GTGGGCAAGA CCGAGACCGC GCTCGCGCTG
TCGGAGGCGC TCTACGGCGG CGAGCAGAAC CTGGTCACCA TCAACATGAG CGAGTTCCAG
GAGTCGCACA CCGTCTCCAC GCTCAAGGGC GCGCCGCCCG GCTACGTGGG CTACGGCGAA
GGCGGCGTGC TCACCGAGGC CGTGCGCCGC CGGCCCTACA GCGTGGTGCT GCTCGACGAG
ATCGAGAAGG CCCACCCCGA CGTGCACGAG ATCTTCTTCC AGGTGTTCGA CAAGGGCTGG
ATGGAAGACG GCGAGGGCCG CCACATCGAC TTCCGCAACA CCGTGATCAT CATGACGTCG
AACGTCGGCA CCGACCTGGT CATGCAGCTG TGCGAAGACC CGACCCTGCG CCCCGACCCC
GAGCCGCTCG CGGCCGCGCT GCGCGAACCG CTGCTCAAGG TGTTCGCGCC GGCGCTGCTG
GGCCGGCTGG TTGTAGTGCC TTATTACCCG TTGCAAGCCG ACGCATTGCA TCGCATCATT
CGCCTCCAGC TCGACCGCAT TGCCACCCGC CTCGATGCGA ACCATGGCAT TGCGCTGGAC
TACGACAACA GCGCCGTCGA ACTGGTGGCG CGCCGATGCA CGGCCATCGA GTCGGGTGGG
CGGATGATCG ATGCGATCCT CACGCACACC ATCCTGCCGC GATTGAGCGA AGAAGTCATC
GGCGCCACCG TCAGTGCGCG CAAGCTCGCC GGCGTGCGGC TGTCCGCAGC GGGCGACGAC
TTCCGGTACG AATTTTCCGA AGCCTAA
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| Protein sequence | MTDIRRVSLF SKLNPMLYKA LETATAFAKL RGNAYVELVH WLHQILQLQD SDLLRIVKRA
GLNLDAVEQD LVRALDRLPH GATSISDISE HVDNAVERAW VYASLRFEAT SIRGAYLLAG
IVKTPGLRQV LSGISREFDK IVPDVLVAQL PAWTEGSPED DFDAAAAPGQ AAPAESHQGD
GAAAGGSALA KYASDLTAKA RAGELDPVYG RDDEIRQIID ILMRRRQNNP LLTGEAGVGK
TAVVEGLASR LAAGDVPPSL KDVSLWVLDP TLLQAGAGVK GEFEQRLRQV IDEVEKSPKP
IVLFVDEVHT LVGAGGTAGT GDAANLLKPA LARGRLRTIG ATTWSEYKKY IEKDPALTRR
FQTIQVHEPT ESKAVVMLRG ISAELEKHHG VLILDAALEA AVSLSHRYIP ARQLPDKAVS
LLDTACARVA LSQHALPAAI EDLHRRIEVL GIESGIAGRE AAIGVGEHQR VEDIAAQVAV
AQAELDLLEQ RRAEESVLVE RIVALRKLLS PDAVPVRAEA KEEEGDEAEA PVEAEPAPPE
PERTPEEIRA ELDQAQDKLV QLQGESPLIL AAVDAQAVAT VVADWTGIPI GRMVRDDAQS
VLRLGEILSA RVVAQPDALE TISRRIRTAR ARLDNPNKPV GVFLLCGPSG VGKTETALAL
SEALYGGEQN LVTINMSEFQ ESHTVSTLKG APPGYVGYGE GGVLTEAVRR RPYSVVLLDE
IEKAHPDVHE IFFQVFDKGW MEDGEGRHID FRNTVIIMTS NVGTDLVMQL CEDPTLRPDP
EPLAAALREP LLKVFAPALL GRLVVVPYYP LQADALHRII RLQLDRIATR LDANHGIALD
YDNSAVELVA RRCTAIESGG RMIDAILTHT ILPRLSEEVI GATVSARKLA GVRLSAAGDD
FRYEFSEA
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