Gene Vapar_0197 details

Gene Information

• Locus tag: Vapar_0197
• ID: 7971406
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 204239
• End bp: 204766
• Gene Length: 528 bp
• Protein Length: 175 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 644790800
• Product: type VI secretion system lysozyme-related protein
• Protein accession: YP_002942126
• Protein GI: 239813216
• COG category: [S] Function unknown
• COG ID: [COG3518] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03357] type VI secretion system lysozyme-related protein

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAGGCCG ACGGCGACCA GCAAGAAAGC GTTGCACGTG ACCGCCTGCA GCCCGTGCTG 
CTCGACCGCC TGACCGACAA GCAGCCGCAA AGCCGCCAGG AGCGCGCGGG CGCATTCCTC 
ATGAGCGGCA AGCTGCTGCG CGACTCGGTG CTGCGCGACC TGCAGTGGCT GCTCAACACC 
ACCAACTTCG GCGCGGACCA CACCATCAAC GCCATGCCGC GCGCGCGGCG CTCGGTGGTG 
AACTACGGCG TGCGCGGCTG GGCCGGCGGA CGCATGTCGG AGGTCGACTT CGCGGACGTC 
GAGGCCGCCA TCCGCGCCGC GATCATCGAC TTCGAGCCGC GCATCATGAA GGACAGCATC 
GACGTGCGCT GCGTCACCGA CGCCACCGAC CTGGAGCACC ACAACCTGCT CGCGCTCGAG 
ATCCGCGGCA CCTTGTGGTC GGTGCCCTAC CCGATCGAAT TCATCCTGCG CTCCGAGCTC 
GACCTCGAGA GCGGCCACAT GGTCCTGCGC CCGACGGGAG GGCTCTGA 

 

Protein sequence

MEADGDQQES VARDRLQPVL LDRLTDKQPQ SRQERAGAFL MSGKLLRDSV LRDLQWLLNT 
TNFGADHTIN AMPRARRSVV NYGVRGWAGG RMSEVDFADV EAAIRAAIID FEPRIMKDSI 
DVRCVTDATD LEHHNLLALE IRGTLWSVPY PIEFILRSEL DLESGHMVLR PTGGL