| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0194 |
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| Symbol | |
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| ID | 7971403 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 201189 |
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| End bp | 202697 |
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| Gene Length | 1509 bp |
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| Protein Length | 502 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644790797 |
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| Product | type VI secretion protein, EvpB/VC_A0108 family |
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| Protein accession | YP_002942123 |
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| Protein GI | 239813213 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3517] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03355] type VI secretion protein, EvpB/VC_A0108 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACTG CACCCAAACA GACAGCGCGC GGACAGGCCG CCACCATCGA AGCGCTCGAG
CCCAACGAGT TCTCCGACCT CCTGCAGCGC GAGTTCAAGC CCAAGACCGA CCAGGCGCGC
GAGGCGGTGC AAAGCGCCGT CAAGACGCTG GCGGTGCAGG CGCTTGAAAG CACCGTCACC
ATCTCGAACG ATGCCTACCG CACCGTGCAG GCGATCATCA CCGAGATCGA CCGCAAGCTC
TCCGAGCAGA TCAACCAGAT CCTGCACCAC GAAGACTTCC AGCAGCTCGA AGGCGCATGG
CGCGGCCTGC ACTACCTGGT CAACAACACC GAGACCGACG AGCAGCTCAA GATCCGCGTG
ATGTGCGCCT CCAAGCGCGA AGTGGCGCGC TCGCTCAAGC GCCATAAGGG CATCGGCTGG
GACCAGAGCC CGCTGTTCAA GAAGATCTAT GAGGCCGAGT ACGGCCAGTT CGGTGGCGAG
CCCTTCGGCG CGCTGATCGG CGACTTCCAC TTCGACCACA GCCCGCCCGA TGTCGAGATG
CTCGGCGAAA TGGCCAAGAT CGCCGCGGCC GCGCACTGCC CCTTCATTGC CGGCGCATCG
CCCACCGTGA TGCAGATGGA TTCGTGGCAG GAACTGTCGA ACCCGCGCGA CCTCACCAAG
ATCTTCCAGA ACACCGAGCA CACGGCCTGG CGGTCGCTGC GCGAGTCGGA AGACGCGCGC
TACATCGGCC TGGCCATGCC GCGCTTCCTG GCGCGCCTGC CGTACGGCGC GCGCACCAAT
CCGGTCGACG AGTTCGAGTT CGAGGAAGAA ACCGACTCGG CCCTGCACAA CCGCTACACC
TGGGCCAATT CGGCCTACGC GATGGGCGTG AACATCAACC GCTCGTTCAA GCAGTTCGGC
TGGTGCACGT CGATCCGCGG CGTGGAGTCG GGCGGCGCGG TCGAGAACCT GCCCACCCAC
ACCTTCCCGA CCGACGATGG CGGCGTGGAC ATGAAGTGCC CCACCGAGAT CGCCATCAGC
GACCGGCGCG AGGCCGAGCT CGCCAAGAAC GGCTTCATGC CGCTGGTGCA CCGCAAGAAC
TCCGACTTCG CGGCCTTCAT CGGCGCGCAG TCGCTGCAGC AGCCGGCCGA GTACTACGAC
GCGGATGCCA CGGCCAATGC CAACCTGGCG GCGCGCCTGC CTTACCTGTT CGCATGCTGC
CGCTTCGCGC ACTACCTGAA GTGCATCGTG CGCGACAAGA TCGGTTCGTT CCGCGAGCGC
GAGGACATGG AGCGCTGGCT CAACGACTGG ATCATGAACT ACGTGGACGG CAGCCCCGGC
ACGTCGTCCC AGGATACGAA GGCAATGAAG CCGCTGGCGG CGGCCGAAGT CCAGGTGGAA
GCCATCGAGG ACAACCCCGG CTACTACGCC GCCAAGTTTT TTCTCCGGCC GCACTATCAG
CTCGAAGGGC TGACGGTGTC ATTGCGGCTG GTTTCGAAGC TGCCATCCAA CAAGAAGGAC
AGCAGCTAG
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| Protein sequence | MSTAPKQTAR GQAATIEALE PNEFSDLLQR EFKPKTDQAR EAVQSAVKTL AVQALESTVT
ISNDAYRTVQ AIITEIDRKL SEQINQILHH EDFQQLEGAW RGLHYLVNNT ETDEQLKIRV
MCASKREVAR SLKRHKGIGW DQSPLFKKIY EAEYGQFGGE PFGALIGDFH FDHSPPDVEM
LGEMAKIAAA AHCPFIAGAS PTVMQMDSWQ ELSNPRDLTK IFQNTEHTAW RSLRESEDAR
YIGLAMPRFL ARLPYGARTN PVDEFEFEEE TDSALHNRYT WANSAYAMGV NINRSFKQFG
WCTSIRGVES GGAVENLPTH TFPTDDGGVD MKCPTEIAIS DRREAELAKN GFMPLVHRKN
SDFAAFIGAQ SLQQPAEYYD ADATANANLA ARLPYLFACC RFAHYLKCIV RDKIGSFRER
EDMERWLNDW IMNYVDGSPG TSSQDTKAMK PLAAAEVQVE AIEDNPGYYA AKFFLRPHYQ
LEGLTVSLRL VSKLPSNKKD SS
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