Gene Vapar_0193 details

Gene Information

• Locus tag: Vapar_0193
• ID: 7971402
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 200601
• End bp: 201170
• Gene Length: 570 bp
• Protein Length: 189 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 644790796
• Product: type VI secretion protein, VC_A0107 family
• Protein accession: YP_002942122
• Protein GI: 239813212
• COG category: [S] Function unknown
• COG ID: [COG3516] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03358] type VI secretion protein, VC_A0107 family

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAGACA ACCGTGTCAG AAACAGTGGT CAGAAGTTCA TCGCGCGCAA CCGGGCACCC 
CGCGTGCAGA TCGAGTACGA CGTCGAGATC TACGGCAGCG AGCGCAAGAT CCAGCTGCCC 
TTCGTGATGG GCGTGATCGC CGATCTCGCG GGCAAGCAGG TCGACCCGAT GCCCGACCTT 
GCCGAGCGCG ACTTCATGGC GGTGGACATC GACAACTTCG ACGACCGCAT GAAGGCCATC 
AAGCCGCGCG TGGCCTTCCA GGTGCCCAAC ACCCTCACGG GCGAAGGGCA GATGAACGTC 
GACATCACCT TCGACAGCAT GGATGACTTC TCGCCCGCGC GCATCGCCCG CCAGGTCGGC 
GCGCTGCAGC ATCTGCTGGA AGCGCGCACC GAGCTTTCCA ACCTGCTGTC CTACATGGAC 
GGCAAGAACG GCGCCGAGCA GCTGATCGCC CAGGCGCTGC AGAACCCGGA GCTGCTCAAG 
TCGCTCGCAT CCGCACCCAA TCCCGCCGTT GCCAAGGCGA TCGAGGCCGC GAACGAAAAG 
TCGGGCAACC CCGGCACCCC TTCCGAGTAA 

 

Protein sequence

MADNRVRNSG QKFIARNRAP RVQIEYDVEI YGSERKIQLP FVMGVIADLA GKQVDPMPDL 
AERDFMAVDI DNFDDRMKAI KPRVAFQVPN TLTGEGQMNV DITFDSMDDF SPARIARQVG 
ALQHLLEART ELSNLLSYMD GKNGAEQLIA QALQNPELLK SLASAPNPAV AKAIEAANEK 
SGNPGTPSE