| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0187 |
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| Symbol | |
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| ID | 7971396 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 191673 |
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| End bp | 192395 |
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| Gene Length | 723 bp |
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| Protein Length | 240 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644790790 |
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| Product | Nicotinamidase |
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| Protein accession | YP_002942116 |
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| Protein GI | 239813206 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG1335] Amidases related to nicotinamidase |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACGACT CGCACCGCAG ATCCCTTCTG AAGTCCACGG CCGCACTGGG CCTGCTGGGC
GCGGCCGGAA CGCTGTTCGC GGCTCCGAAG CTCAAGCCGA ACGACAAGTC CGCGCTGATC
GTGATCGACG TGCAGAACTG CTTCGTCGAT GGCGGCACGC TGCCCGTCAA GGGCGGCGCC
GAGGTGGTGC CGGTGATCAA CAAGCTGGCC GATTCGTTCG AGAACATCGT GGTCACGCAG
GACTGGCACA CGCAAGGCCA TGCGTCGTTC GCGAGCGCGC ATGCCGGGCA GAAGCCGTTC
AGCAGCATCA AGCTCTCGTA CGGCAACCAG GTGCTCTGGC CCGACCACTG CGTGCAGGGC
ACCGACGACG CGGCGCTGCA CAAGGACCTG AAGCTGCCCA CCGCGCAGGT CATCGTCCGC
AAGGGCTTCC ACAAGGGCGT CGACAGCTAT TCCGCCTTCG AGGAGGCCGA CCGCAAGACC
GCCACCGGCC TGGGCGGCTA CCTCAAGCAG CGCGGCATCA AGACGGTCTA CGTGGCCGGC
CTGGCCACCG ACTTCTGCGT GGCTTGGACC GCGCTCGATG CGCGCAAGGC CGGCTTCGAG
GTCTACGTGA TCGAGGACGC CACGCGCGCC ATCGACCTCA ACGGCTCGCT CGCCGCCGCA
TGGAAGCAGA TGGCGGCCAA GGGCGTCAAG CGCATCCAGT CCGCCGACAT CCAGGCGGCC
TGA
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| Protein sequence | MHDSHRRSLL KSTAALGLLG AAGTLFAAPK LKPNDKSALI VIDVQNCFVD GGTLPVKGGA
EVVPVINKLA DSFENIVVTQ DWHTQGHASF ASAHAGQKPF SSIKLSYGNQ VLWPDHCVQG
TDDAALHKDL KLPTAQVIVR KGFHKGVDSY SAFEEADRKT ATGLGGYLKQ RGIKTVYVAG
LATDFCVAWT ALDARKAGFE VYVIEDATRA IDLNGSLAAA WKQMAAKGVK RIQSADIQAA
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