Gene Vapar_0183 details

Gene Information

• Locus tag: Vapar_0183
• ID: 7971392
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 187423
• End bp: 189351
• Gene Length: 1929 bp
• Protein Length: 642 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 644790786
• Product: inner-membrane translocator
• Protein accession: YP_002942112
• Protein GI: 239813202
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0559] Branched-chain amino acid ABC-type transport system, permease components

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCCTCT CGTCCCTGCT GCTTCAGTTC CTCACCGGGC TGTCGTCGGC TTCGTCGCTG 
TTCCTCGTGG GGGCCGGCCT TTCGTTGATC TTCGGCGTCA CGCGCATCGT CAACTTTGCG 
CATGGCTCCT TCTTCATGGT GGGCATCTAC CTTGCCTACA CATTGGTCGA CAAGCTCGGC 
ACGCTCGGCT TCTGGCCGGC GGTGCTGATT GCCGCGCTGG CGGTGGGCGT GATCGGCGCG 
CTGATCGAGA TGGTGCTGCT GCGCCGCATC TACAAGTCGC CCGAGCTGTT CCAGTTGCTG 
GCCACCTTTG CGCTGGTGCT CGTCATCAAG GACGCGGTGC TCTATGTCTG GGGGCCGGAC 
GAACTGCTCG GCCCGCGCGC GCCGGGCCTG TCGGGATCGG TCGACATCCT GGGCCGGCAG 
TTTCCGACCT ACGACCTGTT CCTGATCGTC GTCGGCCCGG TGGTGCTCGG CCTCATGTGG 
CTGCTGCTCA CGCGCACCCG CTGGGGCACG CTGGTGCGCG CCGCCACGCA GGACCGCGAG 
ATGGTCAGCG CGCTGGGCGT GAACCAGGCC TGGCTGTTCA CGGCGGTGTT TGCGCTGGGC 
GCCACGCTCG CGGCATTGGG CGGTGCGCTG CAGCTGCCGC GCGAGCCGGC CACGCTGGCC 
ATGGACCTCA ACACCATTGG CGCGGCCTTC GTGGTGGTGG TGGTGGGCGG CATGGGCTCG 
ATTCCCGGCG CGTACGTGGC GGCGCTGCTG CTGTCCGAGA TCAAGGCGGT GTGCATCTGG 
CTTGGCGTGG TCGAGATCTT CGGCTACAGC GTGTCGTTCT CCAAGCTCAC GCTGGTGGTC 
GATTTCATCG TGATGGCCAT CGTGCTGGTG TGGCGCCCCT GGGGCCTGCT CGGCCGCCCG 
CAGGCGCCCA GCCGCTACGT GGGCATGCAG GAAGAGCCGC TGCGGCGCGC GAGCAAGGGC 
TACCTGTGGC TCGTCGCCGC GCTTGGCGTG GCGCTCATGG CGATGCCGCT GCTCACCGCC 
GATTCGCCCT ACACCACGGT GCTGATGATC GACCTGCTGA TCGCGGCGCT GTTCGCGGCC 
AGCCTGCACT TCATCATGGG GCCGGCCGGC ATGCATTCGT TCGGGCATGC GGCCTACTTC 
GGGCTCGGTG CCTATGGCGC CGCTTTGCTG GTGCGCACTA GCGGCATGCC GATGGAGATT 
GCGCTCATCG TCGCGCCGCT GGTCGCCGCC ATCGGCGCGT TCGTCTACGG CTGGTTCGCG 
GTGCGGCTTT CGGGCGTGTA CCTGGCGATG CTCACGCTGG CCTTCGCGCA GATCACCTGG 
GCCGTGGTCT ACCAATGGGA TTCGTTCACC GGCGGCAGCA ACGGGCTCAC CGGCGTGTGG 
CCTTCGGAGT GGCTGTCGGA CAAGCGCACC TACTACTGGC TCACGCTGGT GCTGGTGGCC 
GCGGGCATTC TGATGCTGCG CCGCGTGCTG TTCTCGCCGT TCGGCTATGC ACTGCGCGCG 
GGGCGCGATT CGGTGCTGCG GGCCGATGCG ATCGGCATCG ACGTCAAGCG CATGCAATGG 
ACGGCGTTTG TCATTGCGGG TGCGGCGGCG GGGCTGGCCG GGGCGCTCTA TGCTTTTTCG 
AAGGGCAGCA TCTCGCCTGA GAGCCTGAGC GTCGACAAGT CGGTGGACGG GCTGGTGATG 
GTGCTGCTGG GCGGTATCCA GACGCTCGCG GGGCCGGTGG TGGGGGCTGT CACTTTCAGC 
TGGCTGCATG ACACGGTGGC GCGCAATACC GACTATTGGC GGGCGACGCT GGGGGCGATC 
ATCCTGCTGC TGGTGCTGCT GTTTCCGCAG GGGATTGCTG GGTTTGCGAA GCAGCTCAGT 
GAACGCTTGT TGCGGGGGCG GCGTCGGCGT TCGGAAGTGG ATGTTGCCTT GACGGAGAGG 
CGGACGTGA 

 

Protein sequence

MSLSSLLLQF LTGLSSASSL FLVGAGLSLI FGVTRIVNFA HGSFFMVGIY LAYTLVDKLG 
TLGFWPAVLI AALAVGVIGA LIEMVLLRRI YKSPELFQLL ATFALVLVIK DAVLYVWGPD 
ELLGPRAPGL SGSVDILGRQ FPTYDLFLIV VGPVVLGLMW LLLTRTRWGT LVRAATQDRE 
MVSALGVNQA WLFTAVFALG ATLAALGGAL QLPREPATLA MDLNTIGAAF VVVVVGGMGS 
IPGAYVAALL LSEIKAVCIW LGVVEIFGYS VSFSKLTLVV DFIVMAIVLV WRPWGLLGRP 
QAPSRYVGMQ EEPLRRASKG YLWLVAALGV ALMAMPLLTA DSPYTTVLMI DLLIAALFAA 
SLHFIMGPAG MHSFGHAAYF GLGAYGAALL VRTSGMPMEI ALIVAPLVAA IGAFVYGWFA 
VRLSGVYLAM LTLAFAQITW AVVYQWDSFT GGSNGLTGVW PSEWLSDKRT YYWLTLVLVA 
AGILMLRRVL FSPFGYALRA GRDSVLRADA IGIDVKRMQW TAFVIAGAAA GLAGALYAFS 
KGSISPESLS VDKSVDGLVM VLLGGIQTLA GPVVGAVTFS WLHDTVARNT DYWRATLGAI 
ILLLVLLFPQ GIAGFAKQLS ERLLRGRRRR SEVDVALTER RT