Gene Vapar_0163 details

Gene Information

• Locus tag: Vapar_0163
• ID: 7971699
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 165302
• End bp: 165871
• Gene Length: 570 bp
• Protein Length: 189 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 644790766
• Product: protein of unknown function DUF886
• Protein accession: YP_002942092
• Protein GI: 239813182
• COG category: [S] Function unknown
• COG ID: [COG3758] Uncharacterized protein conserved in bacteria

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.602522
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCGTGC AGCGCTTCTC TCGCAGCTCT CTCCCCGCCA TGCCCTGGAA GAACGGCGGC 
GGCACCACGC AGGAGATCGC GAGCTGGCCG CAGGGCGCGG GGCTCGATGG CTTCGGCTGG 
CGCGCGAGCA TCGCGACCAT CGCGGCGGCC GGGCCGTTTT CGACTTTCGC GGGCGTGGAC 
CGCAGCATCA TGCTGCTCGA AGGCGACGGC GTGCGGCTGT TCACGCACGA CGGGCGCATC 
GAGCACCGGC TCGACGTGCC GCACCGGCCG TTCGCATTCA GCGGCGACGA CGCGATCGAC 
TGCGCGCTGC TCGGCGGCGC ATCGAACGAC TTCAACATCA TGACGCGCCA TGGACAGTGG 
CGCGCCGACG TGCAGGTGCT GGACCACGCA TCGGCCGTCG AGGCCGCACC GCACGGCGTG 
CTGCTCGCGC TTGGCGGCGC ATGGCGCCTG AACGGCGAGC CCTGCCGCGA GGGCGAAGGC 
CTGTACTGGA CCGACAGTGC GCAGGCATGG CAGGCCGAGC CCGTGCAGGA AGGCGCGCGG 
CTGGCTGCGA TCCGCATCGT GCCGGCGTAA 

 

Protein sequence

MSVQRFSRSS LPAMPWKNGG GTTQEIASWP QGAGLDGFGW RASIATIAAA GPFSTFAGVD 
RSIMLLEGDG VRLFTHDGRI EHRLDVPHRP FAFSGDDAID CALLGGASND FNIMTRHGQW 
RADVQVLDHA SAVEAAPHGV LLALGGAWRL NGEPCREGEG LYWTDSAQAW QAEPVQEGAR 
LAAIRIVPA