| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0162 |
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| Symbol | |
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| ID | 7971698 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 164637 |
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| End bp | 165305 |
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| Gene Length | 669 bp |
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| Protein Length | 222 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644790765 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_002942091 |
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| Protein GI | 239813181 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
[TIGR03004] ectoine/hydroxyectoine ABC transporter, permease protein EhuC |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATTTCG ATTTCTCGCC GGTCTGGCAG GGCTGGCCCG ACCTGCTGCG CGGGGCGCTG
GTCACGGTGG AGATCACCGC CTGCGCGCTC GCGCTCGGCT GCGTGCTGGG CCTGCTGGTG
GGCATCGGCC GGCTCAACCC GAAGCGGCGC TGGCTCTACG GCGCGTGCAC GGCGTACGTG
GCAGCGATCC GTGGCACGCC GCTGCTGGTG CAGCTTTTCA TTTTGTTCTT CGGACTGCCG
CACTTCGGCA TCCTGCTGCC GGCCTTCCTG TGCGGCGTGC TGGGGCTCGG CGTGTATTCG
GGTGCCTACG TGTCGGAGAT CGTGCGTGGC GCGATCCAGT CGATCGACAA GGGCCAGACC
ATGGCGGCGC AGTCGCTGGG CATGACGCCC GGCACCGCGA TGCGCGAGAT CGTGCTGCCG
CAGGCCGTGG TGCGCATGAT TCCGCCGCTG GGCAACGAGT TCATTGCGCT CATCAAGAAC
TCGGCGCTGG TGTCTCTGTT GACGATCCAC GACGTGATGC ATGAAGGGCA GAAGATCATC
AGCGTGTCGT ACCGCTCGCT CGAGGTCTAC CTGGCGATTG CGCTCGTGTA TTTCGTGCTC
ACGGGCACGA TGACGCTGGT CCTCAGGCAC TTCGAGCAGA AGCTGCGCCA AGGCGGGTTG
ATGCGATGA
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| Protein sequence | MDFDFSPVWQ GWPDLLRGAL VTVEITACAL ALGCVLGLLV GIGRLNPKRR WLYGACTAYV
AAIRGTPLLV QLFILFFGLP HFGILLPAFL CGVLGLGVYS GAYVSEIVRG AIQSIDKGQT
MAAQSLGMTP GTAMREIVLP QAVVRMIPPL GNEFIALIKN SALVSLLTIH DVMHEGQKII
SVSYRSLEVY LAIALVYFVL TGTMTLVLRH FEQKLRQGGL MR
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