| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0161 |
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| Symbol | |
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| ID | 7971697 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 163786 |
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| End bp | 164526 |
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| Gene Length | 741 bp |
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| Protein Length | 246 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644790764 |
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| Product | extracellular solute-binding protein family 3 |
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| Protein accession | YP_002942090 |
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| Protein GI | 239813180 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.377397 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACACCC GCCGCACCCT CGTTGCCGCC GCACTCTCCA GCCTCGCCTT CTTCGGCTTT
GCCGCCACCG CGCAGGCGCA GGGCGAGCCG CTGCGCGTGG CCACCGATGC CACCTTCCCG
CCGATGGAGT TCGTGGAGAA CGGCAAGCGC ACGGGCTTCG ACGTGGAGCT GGTCGAGGCC
ATCGGCAAGA CGCTGGGCCG CAAGATCGAA TGGATCGACA TCGACTTCAA GGGGCTCGTG
CCGGGCCTCA TTTCCAAGCG CTTCGACATG GCCGTCTCGG CCATCTACAT CACCGACGAG
CGCAGGAAGG TCGTCGACTT CACCGTGCCC TACTACGCGG GCGGCCTCGT GGTGATGGTG
AAGGACGGCA ACACGGCCAT CAAGGCGCCG GCCGACATCA ACGGCAAGAA GGTCAGCGTG
CAGGTGGGCA CCAAGTCGGT CGCCTACACC AAGGAGAAAT TCCCGCAGGT GCAGCTGATG
GAAGTCGAGA AGAACCAGGA GATGTTCAAC CTCGTCGACA TCGGCCGCGC CGATGCCGCC
GTGACCGGCA AGCCCGCCGC CTACCAGTAC GTGCGCACGC GCGGCGGCCT CAAGGTGCTG
CCCGAGCAGA TCACCACCGA GGAATACGGC ATGGCCATCC GCAAGGACAC GCCCGAACTC
ACCAAGGCGG TGAACGGTGC CATCGAGAAG CTCAAGGCCG ACGGCACCTA CGCGCAGATC
GTCGCCAAGT GGTTCAAGTA A
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| Protein sequence | MNTRRTLVAA ALSSLAFFGF AATAQAQGEP LRVATDATFP PMEFVENGKR TGFDVELVEA
IGKTLGRKIE WIDIDFKGLV PGLISKRFDM AVSAIYITDE RRKVVDFTVP YYAGGLVVMV
KDGNTAIKAP ADINGKKVSV QVGTKSVAYT KEKFPQVQLM EVEKNQEMFN LVDIGRADAA
VTGKPAAYQY VRTRGGLKVL PEQITTEEYG MAIRKDTPEL TKAVNGAIEK LKADGTYAQI
VAKWFK
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