Gene Vapar_0156 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0156 
Symbol 
ID7971692 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp157958 
End bp158740 
Gene Length783 bp 
Protein Length260 aa 
Translation table11 
GC content67% 
IMG OID644790759 
ProductABC transporter related 
Protein accessionYP_002942085 
Protein GI239813175 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1116] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGACC AACTTTCCAT CCAGGGCGTC TCGCGCGTCT TCACCGGCGC CAACGGCCAG 
CGCACGCAGG CGCTGCTGCC GATCGACTTC GAGGTGCGCG AGAACGACTT CGTCACCATC
CTCGGCCCCT CGGGCTGCGG CAAGTCGACG CTGCTGCGCA TCGTCGCGGG GCTCGACTTC
CCGACCACCG GCCAGGTGCT GCTCGACGGC GAGCGCATCG AAGGCCCGGG CGCGGACCGC
GGCGTGGTGT TCCAGAGCTA CACGCTCTTT CCGTGGCTCA CGGTGGCGCA GAACATCCGC
TTCGGCCTGC GCGAGCGCGG CATGAGCGAG GCCGACCAGA AGGAGCGCAG CGAGTTCTTC
ATCGCCAAGG TGGGGCTGCG CGGCTTCGAG CACCATTTTC CGAAGCAGCT CTCGGGCGGC
ATGCAGCAGC GCACCGCAAT TGCGCGCGCG CTCGCCAACG ACCCCAAGAT GCTGCTGCTG
GACGAGCCCT TCGGCGCGCT CGACAACCAG ACCCGCGTGC TGATGCAGGA GCTTTTGCTC
GGCATCTGGG AGTCGGCGCG CAAGACGGTG CTGTTCGTCA CGCACGACAT CGACGAGGCG
ATCTTCATGG CCAACCGCGT GGCGGTGTTC AGCGCGCGGC CGGGCCGCAT CAAGACCGAG
ATCGCGGTCG ACTTTCCGCA TCCGCGCAGC TACACCATCA AGACCTCGCC GGAGTTCATG
GAAATCAAGG CGCGGCTGAC CGAAGAGATC CGCGCCGAGT CGATGGCCGC GGCCGAGCAC
TGA
 
Protein sequence
MNDQLSIQGV SRVFTGANGQ RTQALLPIDF EVRENDFVTI LGPSGCGKST LLRIVAGLDF 
PTTGQVLLDG ERIEGPGADR GVVFQSYTLF PWLTVAQNIR FGLRERGMSE ADQKERSEFF
IAKVGLRGFE HHFPKQLSGG MQQRTAIARA LANDPKMLLL DEPFGALDNQ TRVLMQELLL
GIWESARKTV LFVTHDIDEA IFMANRVAVF SARPGRIKTE IAVDFPHPRS YTIKTSPEFM
EIKARLTEEI RAESMAAAEH