Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0153 |
Symbol | |
ID | 7971689 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 153937 |
End bp | 155838 |
Gene Length | 1902 bp |
Protein Length | 633 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644790756 |
Product | ATP-dependent DNA helicase RecQ |
Protein accession | YP_002942082 |
Protein GI | 239813172 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0514] Superfamily II DNA helicase |
TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family [TIGR01389] ATP-dependent DNA helicase RecQ |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTCCTCGC TCGCTCCCCT TCCCCTCGAC GCCCCCGGCA GCAGCAGCGC ACCCGCCGAC ATCCTTCACG AAGTCTTCGG CTATTCGCAG TTCCGCGGGC CGCAGCAGGA CATCGTCGAG CACGTGGTGG CCGGCGGCGA CGCGCTGGTG CTGATGCCCA CGGGCGGCGG CAAGTCGCTG TGCTACCAGA TCCCGGCCAT TGCGCGGCAG CGCGCGGGGC GCGGCGTCTC GGTGGTGGTG TCGCCGCTGA TCGCGCTGAT GCACGACCAG GTCGGCGCGC TGCACGAGGC CGGGGTGAAC GCGGCCTTCC TGAATTCGAC GCTCGACTGG GAGCAGACGC AGGACGTCGA GCGCCGCATG CTGCGCGGCG AGATCACGCT GCTGTACGCG GCGCCCGAGC GCGTGAACAC GCCGCGCTTT CTCTCGCAGC TCGATTCGCT GAAGGAGCGC GGCAAGCTCT CGCTGTTCGC GATCGACGAG GCGCATTGCG TGAGCCAGTG GGGCCACGAC TTCCGCCCCG AATACCGCGC GCTCACGGTG CTGCACGAGC GCTACCCGGG CGTGCCGCGC ATCGCGCTCA CCGCCACGGC CGATGCGCTC ACGCGCGCCG ACATCGTCGA GCGGCTGCAG CTGGAGGAGG CGCGCCAGTT CGTCTCCAGC TTCGACCGGC CGAACATCCG CTACACCATC GTCGAGAAGA AGGACGCGAC CACGCAGCTG CTGCGCTTCA TCGAGCGCGA GCACGAAGGC GATGCGGGCG TGGTCTATTG CCAGTCGCGC AAGCGCGTGG AAGACGTGGC CGTGATGCTG AAGGGCGCGG GCATCAACGC GCTGCCCTAC CACGCGGGCC TGGACGCGGC GGTGCGCCAG AAGCACCAGG ACCGGTTCCT GCGCGAAGAA GGCGTGGTGA TGGTCGCGAC CATTGCCTTC GGCATGGGCA TCGACAAGCC CGACGTGCGC TTTGTCGGCC ACCTCGACAT GCCCAAGAAC ATCGAGGGCT ACTACCAGGA AACCGGCCGC GCGGGCCGCG ACGGCGCACC GGCCGATGCC TGGATGGCCT ACGGCCTGCA GGACGTGGTG AACCAGCGCC GCATGATCGA CGAGAGCCCC GCGGGCGAAG AGTTCAAGCA GGTGATGCGC GGCAAGCTCG ACGCGCTGCT CTCATTGGCC GAGGCAAGCG ACTGCCGCCG CGTGCGCCTC CTGGGCTACT TCGGCGAGAA GAGCACCCCC TGCGGCAATT GCGACAACTG TTTGAACCCA CCGCAGGTGT GGGATGGCAC CGATGCCGCG CGCAAGCTGC TCTCCACCAT CTACCGCGTG CAGCAGCTGA GCGGCATCAG CTTTGGCGCG GGCCACATCA TGGACATCCT GCGCGGCAAG GAAACCGAGA AGGTCAAGCA GTTCGGGCAC GAGCGCATCA GCACCTTCGG CATTGGCGCG GAGTTCAGCG AAGTGCAGCT GCGCGGCGTG CTGCGCCAGC TCATCGCCAC GGGCGCGCTG GCGGTCGATG CGGAAGCCTT CAACACGCTG AAGCTTACGG AAGGCTCGCG CGCGGTGCTC AAGGGCGAAG CGAACGTGAC GCTGCGCGAG TCGGTTTCGT CGCCGGCCGC GCGCGGCGGC AAGCCCCGGC GCGAAAAGGC GGCGCGCGGC GCCCCGTCTC CGGCGGCCGC GGCACTCGAT GCCGACGGCC AGAAGCGCTT CGAGGCGCTC AAGGCCTGGC GCGCGGAAGT GGCGCGCGAG CACAACCTGC CGGCCTACGT GATCTTCCAC GACGCCACGC TGGCGGCCAT TGCCGAGCGC GCGCCCGCGA CGCTCGAAGA CCTGCAGGGC ATCAGCGGCA TCGGCACCAA GAAGCTCGAG GCCTACGGCG CCGAGGTGCT GCGCGTCTGC AGCGCGTTCT AG
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Protein sequence | MSSLAPLPLD APGSSSAPAD ILHEVFGYSQ FRGPQQDIVE HVVAGGDALV LMPTGGGKSL CYQIPAIARQ RAGRGVSVVV SPLIALMHDQ VGALHEAGVN AAFLNSTLDW EQTQDVERRM LRGEITLLYA APERVNTPRF LSQLDSLKER GKLSLFAIDE AHCVSQWGHD FRPEYRALTV LHERYPGVPR IALTATADAL TRADIVERLQ LEEARQFVSS FDRPNIRYTI VEKKDATTQL LRFIEREHEG DAGVVYCQSR KRVEDVAVML KGAGINALPY HAGLDAAVRQ KHQDRFLREE GVVMVATIAF GMGIDKPDVR FVGHLDMPKN IEGYYQETGR AGRDGAPADA WMAYGLQDVV NQRRMIDESP AGEEFKQVMR GKLDALLSLA EASDCRRVRL LGYFGEKSTP CGNCDNCLNP PQVWDGTDAA RKLLSTIYRV QQLSGISFGA GHIMDILRGK ETEKVKQFGH ERISTFGIGA EFSEVQLRGV LRQLIATGAL AVDAEAFNTL KLTEGSRAVL KGEANVTLRE SVSSPAARGG KPRREKAARG APSPAAAALD ADGQKRFEAL KAWRAEVARE HNLPAYVIFH DATLAAIAER APATLEDLQG ISGIGTKKLE AYGAEVLRVC SAF
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