Gene Vapar_0153 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0153 
Symbol 
ID7971689 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp153937 
End bp155838 
Gene Length1902 bp 
Protein Length633 aa 
Translation table11 
GC content69% 
IMG OID644790756 
ProductATP-dependent DNA helicase RecQ 
Protein accessionYP_002942082 
Protein GI239813172 
COG category[L] Replication, recombination and repair 
COG ID[COG0514] Superfamily II DNA helicase 
TIGRFAM ID[TIGR00614] ATP-dependent DNA helicase, RecQ family
[TIGR01389] ATP-dependent DNA helicase RecQ 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTCCTCGC TCGCTCCCCT TCCCCTCGAC GCCCCCGGCA GCAGCAGCGC ACCCGCCGAC 
ATCCTTCACG AAGTCTTCGG CTATTCGCAG TTCCGCGGGC CGCAGCAGGA CATCGTCGAG
CACGTGGTGG CCGGCGGCGA CGCGCTGGTG CTGATGCCCA CGGGCGGCGG CAAGTCGCTG
TGCTACCAGA TCCCGGCCAT TGCGCGGCAG CGCGCGGGGC GCGGCGTCTC GGTGGTGGTG
TCGCCGCTGA TCGCGCTGAT GCACGACCAG GTCGGCGCGC TGCACGAGGC CGGGGTGAAC
GCGGCCTTCC TGAATTCGAC GCTCGACTGG GAGCAGACGC AGGACGTCGA GCGCCGCATG
CTGCGCGGCG AGATCACGCT GCTGTACGCG GCGCCCGAGC GCGTGAACAC GCCGCGCTTT
CTCTCGCAGC TCGATTCGCT GAAGGAGCGC GGCAAGCTCT CGCTGTTCGC GATCGACGAG
GCGCATTGCG TGAGCCAGTG GGGCCACGAC TTCCGCCCCG AATACCGCGC GCTCACGGTG
CTGCACGAGC GCTACCCGGG CGTGCCGCGC ATCGCGCTCA CCGCCACGGC CGATGCGCTC
ACGCGCGCCG ACATCGTCGA GCGGCTGCAG CTGGAGGAGG CGCGCCAGTT CGTCTCCAGC
TTCGACCGGC CGAACATCCG CTACACCATC GTCGAGAAGA AGGACGCGAC CACGCAGCTG
CTGCGCTTCA TCGAGCGCGA GCACGAAGGC GATGCGGGCG TGGTCTATTG CCAGTCGCGC
AAGCGCGTGG AAGACGTGGC CGTGATGCTG AAGGGCGCGG GCATCAACGC GCTGCCCTAC
CACGCGGGCC TGGACGCGGC GGTGCGCCAG AAGCACCAGG ACCGGTTCCT GCGCGAAGAA
GGCGTGGTGA TGGTCGCGAC CATTGCCTTC GGCATGGGCA TCGACAAGCC CGACGTGCGC
TTTGTCGGCC ACCTCGACAT GCCCAAGAAC ATCGAGGGCT ACTACCAGGA AACCGGCCGC
GCGGGCCGCG ACGGCGCACC GGCCGATGCC TGGATGGCCT ACGGCCTGCA GGACGTGGTG
AACCAGCGCC GCATGATCGA CGAGAGCCCC GCGGGCGAAG AGTTCAAGCA GGTGATGCGC
GGCAAGCTCG ACGCGCTGCT CTCATTGGCC GAGGCAAGCG ACTGCCGCCG CGTGCGCCTC
CTGGGCTACT TCGGCGAGAA GAGCACCCCC TGCGGCAATT GCGACAACTG TTTGAACCCA
CCGCAGGTGT GGGATGGCAC CGATGCCGCG CGCAAGCTGC TCTCCACCAT CTACCGCGTG
CAGCAGCTGA GCGGCATCAG CTTTGGCGCG GGCCACATCA TGGACATCCT GCGCGGCAAG
GAAACCGAGA AGGTCAAGCA GTTCGGGCAC GAGCGCATCA GCACCTTCGG CATTGGCGCG
GAGTTCAGCG AAGTGCAGCT GCGCGGCGTG CTGCGCCAGC TCATCGCCAC GGGCGCGCTG
GCGGTCGATG CGGAAGCCTT CAACACGCTG AAGCTTACGG AAGGCTCGCG CGCGGTGCTC
AAGGGCGAAG CGAACGTGAC GCTGCGCGAG TCGGTTTCGT CGCCGGCCGC GCGCGGCGGC
AAGCCCCGGC GCGAAAAGGC GGCGCGCGGC GCCCCGTCTC CGGCGGCCGC GGCACTCGAT
GCCGACGGCC AGAAGCGCTT CGAGGCGCTC AAGGCCTGGC GCGCGGAAGT GGCGCGCGAG
CACAACCTGC CGGCCTACGT GATCTTCCAC GACGCCACGC TGGCGGCCAT TGCCGAGCGC
GCGCCCGCGA CGCTCGAAGA CCTGCAGGGC ATCAGCGGCA TCGGCACCAA GAAGCTCGAG
GCCTACGGCG CCGAGGTGCT GCGCGTCTGC AGCGCGTTCT AG
 
Protein sequence
MSSLAPLPLD APGSSSAPAD ILHEVFGYSQ FRGPQQDIVE HVVAGGDALV LMPTGGGKSL 
CYQIPAIARQ RAGRGVSVVV SPLIALMHDQ VGALHEAGVN AAFLNSTLDW EQTQDVERRM
LRGEITLLYA APERVNTPRF LSQLDSLKER GKLSLFAIDE AHCVSQWGHD FRPEYRALTV
LHERYPGVPR IALTATADAL TRADIVERLQ LEEARQFVSS FDRPNIRYTI VEKKDATTQL
LRFIEREHEG DAGVVYCQSR KRVEDVAVML KGAGINALPY HAGLDAAVRQ KHQDRFLREE
GVVMVATIAF GMGIDKPDVR FVGHLDMPKN IEGYYQETGR AGRDGAPADA WMAYGLQDVV
NQRRMIDESP AGEEFKQVMR GKLDALLSLA EASDCRRVRL LGYFGEKSTP CGNCDNCLNP
PQVWDGTDAA RKLLSTIYRV QQLSGISFGA GHIMDILRGK ETEKVKQFGH ERISTFGIGA
EFSEVQLRGV LRQLIATGAL AVDAEAFNTL KLTEGSRAVL KGEANVTLRE SVSSPAARGG
KPRREKAARG APSPAAAALD ADGQKRFEAL KAWRAEVARE HNLPAYVIFH DATLAAIAER
APATLEDLQG ISGIGTKKLE AYGAEVLRVC SAF