| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0145 |
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| Symbol | |
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| ID | 7971681 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 143283 |
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| End bp | 144263 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644790748 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002942074 |
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| Protein GI | 239813164 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.300421 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACGTCA ACTTCCGCAC ACTCGATCTC AACCTGCTTC GCGTCTTCGA CGAAGTGATG
GCGGAGCGCA ACCTCACGCG CGCCGCGCGC AACCTGTCGA TCACCCAGCC CGCGGTGAGC
AATGCGCTGC GCCGCCTGCG CGAGGTGCTC GGGGACGAGC TGGTGCGCCG CTCCGGCGCG
GGCGTGGAGC CCACGCCGCG CGCGCTGGCG CTCTGGCCCA CGGTGCGCGA CGCGCTGCGC
CAGCTGCAGC ACACGCTGGC GCCGGGCGAG TTCGACGCAT CGACTGCCGA CACCACTTTC
CTGCTGGCCA TGGCCGACGC CACCGCCGCC GAGCTCATTC CGGGGCTGGT CCAGATCGTG
GAGAAGGAAG CGCCCGCTAT CTCGCTGCGC GTGCTGCCGC TGACCACCCG CGATCCGCGG
CGGATGCTCG AGCAGGAGGA AGTCGACATG GCGATCGGCT ACTTTCCGGC CGTGATCGCG
AGCCTGGCGG CGCGCGGGCA GTCGGGGGTG GGCGTGGCCT TCGAGACCCA GCGGCTCTAC
CTGGGGCAGT ACGTCTGCGT GATGCGGCGC GGCCATCCGC TGGCCAATGC GCCGCTCACA
CTGGACGACT ATTGCGCCGC GCGGCATTTG CTCGTGAGTT TTTCGGGGCG CCCCTACGGC
TTCATCGACC AGACGCTGGG CGCGCTGGGA CGCGAGCGGC GCATCGTGGT AACCGTGAAC
CAGTTCTTCA CGGCCGGCCG GGTGGTGGCC AATTCGGACC TGCTCACCGT GCTGCCACGC
CATTTCGTGA CCGTGACCGG CATCGACGAG CAGCTGGTGC TGCGCGACCT GCCCTTCGAC
CAGCCGATGG TGCACGTCGA TGCCATCTGG CACCGGCGCG CGCAGCACGG GCATGCGCAC
GAGTGGCTGC GCACCGCGCT GCTGCGCTCC GCCGCGGCGG CTTTTGCGGA TTCGGTCCTC
GGGCAGAAGG TGCCCGGATG A
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| Protein sequence | MDVNFRTLDL NLLRVFDEVM AERNLTRAAR NLSITQPAVS NALRRLREVL GDELVRRSGA
GVEPTPRALA LWPTVRDALR QLQHTLAPGE FDASTADTTF LLAMADATAA ELIPGLVQIV
EKEAPAISLR VLPLTTRDPR RMLEQEEVDM AIGYFPAVIA SLAARGQSGV GVAFETQRLY
LGQYVCVMRR GHPLANAPLT LDDYCAARHL LVSFSGRPYG FIDQTLGALG RERRIVVTVN
QFFTAGRVVA NSDLLTVLPR HFVTVTGIDE QLVLRDLPFD QPMVHVDAIW HRRAQHGHAH
EWLRTALLRS AAAAFADSVL GQKVPG
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