| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0142 |
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| Symbol | |
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| ID | 7971678 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 140567 |
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| End bp | 142150 |
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| Gene Length | 1584 bp |
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| Protein Length | 527 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644790745 |
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| Product | phospholipase D/Transphosphatidylase |
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| Protein accession | YP_002942071 |
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| Protein GI | 239813161 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1502] Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.150882 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGCCT CTTCCCCGAT CCGCAGGCTC GCGGCCCTAG TCTGGGCCGC CGTGGCGCTG
GCGTGGCTGG CGGGCTGTGC GGGCCTGCCG CCGCCGCAGC CTCGCGCGCC GGCCATGGCC
ATCACCGACG TCGCGGACAC TGCGCTCGGC CAGCTGGCGC GGCAGCGCGC GCCGCAGGAG
TCCGAATCGC TGTCGGGCTT CCGGCTGCTG CCGGAGGCGG CCTTTGCCTT CGACGCGCGC
ATTTCCCTTG CGCGGCATGC CGAGAAGTCG CTCGACGTGC AGTACTACCT GATCCAGAAC
GACGACGTCG GCCTGCTGCT GCTGCGCGAA CTGCGCGAGG CCGCCGCGCG CGGCGTGCGG
GTGCGCCTGC TGGTGGACGA TCTGTACACC GCCGGCGAGG ACGAGGTGTT CAGCGCGCTC
TCGGCCTTTC CCAACGTCGA GGTGCGGCTG TTCAACCCGC TGCCTTCGCG TGCCGACTCG
TTCGCGCTGC GGCTGCTGTT CTCGCTGGGC GACTTCGGCC GCATCAACCA CCGCATGCAC
AACAAGCTGC TGGTGGCCGA CAACAGCTTT GCCGTCTCGG GCGGCCGCAA CATCGCCAAC
GAATACTTCA TGCGCGGCAC GGCGGCGAAC TTCATCGACA TGGACGTGCT CTCCTGCGGA
CCGGTGGTGC GCCGGATGTC CGAGGGCTTC GACCGCTACT GGAACAGCGA GCATGCCTGG
CCCATCGAGC GCATCGTGCC GCAGCGCATG GCGGCCGAAG AGGCGCACAA GCGCTTCGAC
GCCCTTGCGG CCGCCGCGCT GCCCGACGTG CGCATTCGAC CGCGCGACGT GCTGGACCAT
TCGCCCGTGG GCGAGCAGCT CGCCACCGGC AAGCTCGAGC TGCAATGGGC GACGTCCACG
CTGTTCGTGG ACGACCCCGC GAAGATCACG CGCACCTCGG AGGCCGCCTA CGAGGGCAGC
GTGACCGCCG GCGCGCTCGG CGTCATCAAT TCGGCCAAGC GCGAGGTCAA GATCGGCTCG
CCGTACTTCA TTCCCGGCGC GCGCGGCATG GCGATGATGA AGCAGGCCAT CGAGCGCGGC
GGGCGCATCA CCGTGGTGAC CAACTCGCTC GGCGCCACCG ACGAGCCGCT GGCCTACGCG
GGCTACGAAC GCTACCGCGC CGACATGCTG AAGATCGGCG TCACCATCTA CGAAATCGCG
CCCCGGCTCA CCGGGCGCTC GGGGCGCTTC GGCGATTTCG GCCAGTCGAT CAGCCGGCTG
CATGCCAAGC TCGCGGTGAT CGATGGCGAG CGCTTCTTTG TCGGCTCCAT GAACCTCGAC
CGCCGCTCGG CCGCGGTGAA CACCGAAATG GGCCTCGTGA TCGACAGCCC GGCGCTCGTG
GCCGACTACG AAAGGCTCAT GAGTGGCGAG CGCGTGAGCC TGGGCTACCG GCTGCGGCTC
GCGCCGGGCG GCCGCCGCGT GCAATGGCTC GAATACGACG ACGCCGGCGG CGACATCGTC
CACGAGGACG AGCCCGGCGA GTTTCTGTGG CTGCGCTTCA AGAACTGGCT GCTGCTGCCG
ATCGTGGGCG AGGAGCTGCT GTAG
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| Protein sequence | MAASSPIRRL AALVWAAVAL AWLAGCAGLP PPQPRAPAMA ITDVADTALG QLARQRAPQE
SESLSGFRLL PEAAFAFDAR ISLARHAEKS LDVQYYLIQN DDVGLLLLRE LREAAARGVR
VRLLVDDLYT AGEDEVFSAL SAFPNVEVRL FNPLPSRADS FALRLLFSLG DFGRINHRMH
NKLLVADNSF AVSGGRNIAN EYFMRGTAAN FIDMDVLSCG PVVRRMSEGF DRYWNSEHAW
PIERIVPQRM AAEEAHKRFD ALAAAALPDV RIRPRDVLDH SPVGEQLATG KLELQWATST
LFVDDPAKIT RTSEAAYEGS VTAGALGVIN SAKREVKIGS PYFIPGARGM AMMKQAIERG
GRITVVTNSL GATDEPLAYA GYERYRADML KIGVTIYEIA PRLTGRSGRF GDFGQSISRL
HAKLAVIDGE RFFVGSMNLD RRSAAVNTEM GLVIDSPALV ADYERLMSGE RVSLGYRLRL
APGGRRVQWL EYDDAGGDIV HEDEPGEFLW LRFKNWLLLP IVGEELL
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