| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0138 |
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| Symbol | |
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| ID | 7971674 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 137221 |
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| End bp | 138120 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644790741 |
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| Product | protein of unknown function DUF6 transmembrane |
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| Protein accession | YP_002942067 |
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| Protein GI | 239813157 |
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| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0697] Permeases of the drug/metabolite transporter (DMT) superfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.778802 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCAGC GCAAGACCCA TCTCGACTCC CTCGCCATCG GCCTCCTGAT CGCATGCTGC
GCGTTCTGGG GCCTGCAGCA GATCCTCATC AAGACCACCG TCGCCGAAGT GCCGCCGCTC
TGGCAGGCCT CGGTGCGCAT GGCGGGCGCC GTGGCGCTGC TGTGGCTCTG GTGCCTGTGG
CGCCGCGTGC CGCTGTTCGA GCGCGACGGC ACGCTGCCGG GCGGGCTGCT CGTGGGCCTG
TTGTTCGCGG GCGAGTTCGC CTGCATCTAC CTGGGGCTGC AGCACACCTC GGCTTCCAGG
CTCACGGTGT TTCTCTACAC CGCGCCGTTC TGGGTCTCGC TGCTGCTGCC GCGCTGGGTG
CCGGCCGAGC GGCTGCGCGG CCTGCAGTGG CTGGGGCTGG GCATCGCCTT TGCGGCGGTG
CTGTTCGCGT TCAGCGAAGG CTTCGGACAC TCGAGCTCGG GCCAGCTGCT CGGCGATGCG
ATGGCGATCG TCGGCGGCAT GCTCTGGGGC CTGACCACGC TGGCGCTGCG CACCACGCGG
CTTGCCACCG CGAGCGCCGA AAAGGCCCTG TTCTACCAGG TGGCCGTGAC CGCGGCCGTG
TGTCCGCTGC TGTCGCTGGC GCTCGGCGAA AGCTGGGGCT TCTCGTATTC GGCCTGGGCC
TGGACCTCGA TCGGCCTGCA GACCGTGATC GGCGCCTTCG CGAGCTATCT CACCTGGATG
TGGCTGCTGC GGCACTACCC GGCCACGCAG ATGTCGTCGT TCAGCTTTTT GACGCCGCTG
TTCGCGCTGG TGTTCGGCGT GGTGCTGCTC GGCGAACCGC TCACGCTGCA GCTGATGCTG
GCGCTGGCGG GCGTGGGCCT CGGCATCGTG ATGGTCAACC GGCGAAAGGC ACGGGCATGA
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| Protein sequence | MIQRKTHLDS LAIGLLIACC AFWGLQQILI KTTVAEVPPL WQASVRMAGA VALLWLWCLW
RRVPLFERDG TLPGGLLVGL LFAGEFACIY LGLQHTSASR LTVFLYTAPF WVSLLLPRWV
PAERLRGLQW LGLGIAFAAV LFAFSEGFGH SSSGQLLGDA MAIVGGMLWG LTTLALRTTR
LATASAEKAL FYQVAVTAAV CPLLSLALGE SWGFSYSAWA WTSIGLQTVI GAFASYLTWM
WLLRHYPATQ MSSFSFLTPL FALVFGVVLL GEPLTLQLML ALAGVGLGIV MVNRRKARA
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