| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0128 |
|---|
| Symbol | |
|---|
| ID | 7971664 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 127913 |
|---|
| End bp | 128803 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644790731 |
|---|
| Product | protein of unknown function DUF849 |
|---|
| Protein accession | YP_002942057 |
|---|
| Protein GI | 239813147 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3246] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGCACCG CCAAGACGCT CATCACCTGC GCCGTCACGG GCAACCTCGT GAAGCCCGAA
CAGACGCCGC ACCTGCCGAT CACGCCGGTG CGGATCGCCG ACGAATGCCT GGCCGCGGCC
GAGGCCGGCG CGGCGCAGGT GCACATCCAT GTGCGCCATC CCGAGACCGG CAAGCCGTCG
ATGGAGGTGG AGCTGTACCG CGAGGTGGTC GACCGCATCC GGCGCGGCAA TCGCGAACTG
GTCATCAACC TCACGACCGG CCCCGGCGGG CGCTTCATTC CGAGCGAGGA CGATCCGAAG
ATCGCCGCGC CCGGCACCAC GCTGCTGCCG CCCGAGAAGC GCGTGGAGCA CATCGCGCTG
ATCAGGCCCG ACGTGTGCTC GCTCGATCTC AACACCATGA ACTCGGGCCC CGACGTGGTG
ATGAACACGC CGAAGAATGT GCGCCGCATG GCCAGGGTGA TCCGCGAGGC GGGCGTGAAG
CCCGAGCTGG AGATCTTCGA TTCGGGCGAC ATCAACCTTG CGCTCGACCT CATCGCCGAC
GGCACGCTCG ACGGCCCCGC GATGTGGACC TTCGTCCTCG GCGTGAAGTA CGGCTTCGCG
CCCACGCCCG AGACGCTGCT CTACGCCCGC AACATGCTGC CGCGCGGCGC GTTCTGGAGC
GCCTTCGGCA TCGGCCGCAT GGAGTTCCCG ATCGTTGCGC AGGCATGGCT GCTCGGCGGC
CATGTGCGCG TCGGCATGGA GGACAACATC TACCTGGAGA AAGGCGTGCT GGCCGAAAGC
AATGCGCAGC TGGTGGCGAA GGCGCGCGAC ATCCTGCTGA GCCTTGGGGG CGAGATTGCG
AATCCGCGGG AGGCGCGCGC GATGCTGGGT TTGCCTGGTG GGGGGAGCTG A
|
|---|
| Protein sequence | MSTAKTLITC AVTGNLVKPE QTPHLPITPV RIADECLAAA EAGAAQVHIH VRHPETGKPS
MEVELYREVV DRIRRGNREL VINLTTGPGG RFIPSEDDPK IAAPGTTLLP PEKRVEHIAL
IRPDVCSLDL NTMNSGPDVV MNTPKNVRRM ARVIREAGVK PELEIFDSGD INLALDLIAD
GTLDGPAMWT FVLGVKYGFA PTPETLLYAR NMLPRGAFWS AFGIGRMEFP IVAQAWLLGG
HVRVGMEDNI YLEKGVLAES NAQLVAKARD ILLSLGGEIA NPREARAMLG LPGGGS
|
|---|
| |