| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0125 |
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| Symbol | |
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| ID | 7971661 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 125104 |
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| End bp | 126099 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644790728 |
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| Product | hypothetical protein |
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| Protein accession | YP_002942054 |
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| Protein GI | 239813144 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3181] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.654987 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAAGA CATTCGACAC CTGGAGCCGC CGGCAGGCGC TCACGCTGGC CGCGGCGCTC
GCGGCCATCG GCACGCTCGG CGCCGCACAC GCGCAGAACC CATGGCCCGG CACGCAGCCG
ATCAAGCTCG TGGTGCCCTT CACGGCGGGC AGCGGCACCG ACATCGTCGC GCGGCTCGTG
GCCGAGAAGC TCGGGCCCGC GCTGGGCACC AGCGTGGTGG TGGACAACAA GCCCGGCGCC
GGCGGCACGC TGGGTGCGGC CATCACGGCC AAGGCGCCAG CCGACGGCTA CACGCTGCTG
GTGCATTCGG CCGGGCACCT GGTGAATCCA TGGATCTACA AGGGCCTGTC GTACGACACG
ATCAAGGACT TCACCGGCAT CACGCCCATG GCGAGCCTGC CCAACGTGCT GGTGACCGGG
CCTTCGCACT TCGCGAACGT GCGGGACCTG GTCGCAAAGG CCAAGGCCAA TCCGGGCGGA
CTCAACTACG GCTCCGCGGG CAATGGCTCG GCCACGCACA TGAATGCCGA GGTGTTCCGC
CTCGCGGCCG GGCTCGATGC GCAGCACGTG CCCTTCCGCG GCACGCCCGA GGCCATGACC
GAGGTGATGG CCGGACGTGT CGACTGGTTC TTCGCGCCGA TGGTGTCGGC CCTGCCGCTC
ATCAAGAGCG GCAAGCTGCA GGCGCTGGCC GTGGGCACCG CGAAGCGCTC GCCCGCGCTG
CCCGAGGCGC CCACCACGGT GGAGGCCGGC GTGCCGGGTT CCGAGTACCT GTTCTGGGTC
GGGCTCTTTG CACCCGCGAA GACGCCGCAG CCGGTGGTGG ACCGGCTGCA GGCCGAGGTC
GCGAAGATCA TGGCCTCGCC CGAACTCAAG GAACGGCTCG ACAAGCTCGG CGCCGAGCCC
TTCACGATGC CGTCGGCGCA GTTCAACAAG TTCATTGCCG ATGAAACCAC CAAGGCGCAG
CAGGTGGTCA AGGCCGCGAG CATCAAGGTG GATTGA
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| Protein sequence | MKKTFDTWSR RQALTLAAAL AAIGTLGAAH AQNPWPGTQP IKLVVPFTAG SGTDIVARLV
AEKLGPALGT SVVVDNKPGA GGTLGAAITA KAPADGYTLL VHSAGHLVNP WIYKGLSYDT
IKDFTGITPM ASLPNVLVTG PSHFANVRDL VAKAKANPGG LNYGSAGNGS ATHMNAEVFR
LAAGLDAQHV PFRGTPEAMT EVMAGRVDWF FAPMVSALPL IKSGKLQALA VGTAKRSPAL
PEAPTTVEAG VPGSEYLFWV GLFAPAKTPQ PVVDRLQAEV AKIMASPELK ERLDKLGAEP
FTMPSAQFNK FIADETTKAQ QVVKAASIKV D
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