| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0114 |
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| Symbol | |
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| ID | 7971650 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 114713 |
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| End bp | 115795 |
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| Gene Length | 1083 bp |
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| Protein Length | 360 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644790717 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_002942043 |
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| Protein GI | 239813133 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.290706 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGCTGC GCCCTCTTGC CAAGCCCTCT TTTCCAAGGC CGTTCGCCGC GGCCTGCCTG
CTCGCGCTGG CCACCGTGCT CGCCCTTCCC GCCGCCCAGG CGCAGGAGCG GATCAAGCTC
AAGGCTATCG GCCAGCCGCT GGCCACCGGG CTCATCCAGA AGAACAAGGA ACAGCCCTTC
TTCGAGAACT TCGCGGCCCG CACGGGCCTG CCGATCGACG TCGACTACAA GCCCATCGAC
ACGCTCGGCA TCAAGGACAC CGAGCAGCTG CGCGTGATGA AGGCGGGCCT GTTCGACATC
GTCTCGCTGC GCGTGTCGCA GAACTCGCGC GACGAACCGA CGATCCTGGG CCTCGACCTG
GTCGGCGCCG CGCCCGACTT TGCCACCGGC CGCAAGGTGG CCAAGGCCTA CTTCGACACG
GTCGATGCGC GGCTGCAGCA GCAGTTCAAC GTGAAGCTGC TCGGCGTATG GCCCTTCGGC
CCGCAGATCC TGTTCTGCAA GAAGCCGATT GCCTCGCTGG CCGACATCAA GGGCATGAAG
GTGCGCGTGT ACGACCAGAA CCTGGCCAAG TTCATCGAGC TGGTGGGCGC AACGCCGGTG
CCGGTGTCGT TCGCCGACAC GCACCAGTCG CTGTCGCTCG GCGTGGTCGA CTGCGCCATC
ACCGGGCCGA GCTCGGCCAA CTCGGCCGGC TGGCCCGAGG TCACCACGCA CCAGCTGGCC
ATCGGCTTCC AGATGGCGCT CAACGGCTAC GGCATGACGA TGAAGTCATG GAACGCGCTC
AAGCCCGACC AGCAGGCCAA GCTCAAGGCC GCCTTCGACG GCCTGACCGA CGAGGTGTGG
AAGTACTCCG AGGAGCTGTT CCGCGATGCG CTCAACTGCA ACGCCGGCAG GGACCCGTGC
ACCACCGGCA AGAAGTTCAA GCTGGTCGAC GTGCCGGTCA CGCCGGCCGA CCTCGAGCTG
GTGCGCGGCG CGGTCGGCAA GGTATCGCTG CCGGTGTGGG CCGAGGTCTG CGACAAGTCG
AACCCGGGCT GCTCCAAGGG CTGGCAGGCC ACGGTGGCGC CGGTGCTGGG GCTCAACAAG
TGA
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| Protein sequence | MPLRPLAKPS FPRPFAAACL LALATVLALP AAQAQERIKL KAIGQPLATG LIQKNKEQPF
FENFAARTGL PIDVDYKPID TLGIKDTEQL RVMKAGLFDI VSLRVSQNSR DEPTILGLDL
VGAAPDFATG RKVAKAYFDT VDARLQQQFN VKLLGVWPFG PQILFCKKPI ASLADIKGMK
VRVYDQNLAK FIELVGATPV PVSFADTHQS LSLGVVDCAI TGPSSANSAG WPEVTTHQLA
IGFQMALNGY GMTMKSWNAL KPDQQAKLKA AFDGLTDEVW KYSEELFRDA LNCNAGRDPC
TTGKKFKLVD VPVTPADLEL VRGAVGKVSL PVWAEVCDKS NPGCSKGWQA TVAPVLGLNK
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