| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0112 |
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| Symbol | |
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| ID | 7971648 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 112753 |
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| End bp | 114045 |
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| Gene Length | 1293 bp |
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| Protein Length | 430 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644790715 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_002942041 |
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| Protein GI | 239813131 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0312276 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCTCT TCGTCATAGG GCTCGCGTTC CTCGCGATGC TGGGCATGAT GCTGGTTGGC
ATGCCGATTG CCGTTTCGAT GGCGCTGGTG GGCATCGTCG GCGGCATCGC GGCCTACGGC
GCGCCCTTCA TGGACTCGAT CGCGCCCGTG GTCTGGGGCG TGCAGAACGA GAACCTGCTG
ACCTCGGTGC CGCTGTTCGT GCTGCTCGGC GAACTGCTGC TGCGCTCGGG CATTGCCGAC
CGCATGTACA TCGCGCTGTC GGCCTGGCTC GGCCGCCTGC CCGGCGGGCT GCTGCACACC
AACATCGGCA GCTGCGCGCT GTTCGCGGCC ACCTCGGGTT CGTCGGTGGC CACCGCGGCC
ACGGTGGGCA CGGTGGCGCT GCCGTCGCTG CACCGCCGCG GCTACTCGAT GCGCGCCTCG
CTCGGAAGCC TGGCCGCCGG CGGCACGCTG GGCATCCTGA TTCCGCCGAG CGTGAACATG
ATCGTGTATG GCTCGCTCAC CAACAACTCG ATCGGCAAGC TGTTCATCGC GGGCATCATC
CCGGGCCTGC TGCTGACCGG CTTCTTCATG CTGTGGATCG CGGGCTCCAG CCTGGCGAGC
GGCAACGCGA TGCGCGAGCC CAAGGTGCCG CTGAAGGCGC GCATCCGCGC GCTGGTGCAC
CTGGTGCCGC CGGCGGTGGT GTTCGGCATC GTCATGGGCA GCCTCTACTT CGGCATTGCC
ACCGCGGCCG AGAGCGCCGC GCTCGGCGTG ATTGCGGCGC TGGGCTTCGT GCTGCATTCG
GGCAAGCTCA GCTGGGAGCT GATGCGCAAC TGCTTCGTCT CGACCGCGCG CGTGAGCGGC
ATGATCCTCT TGATCGTGGT GGCGGCCTTC GTGCTGAACC TGACGGTGAG CCTCACCGGC
GTGGCCGAGG CCATGACCAA GTGGGTCTCG GGCCTGGGCC TGTCGGCCAC CGGGCTGATC
CTTGCGCTGA TGCTGTTCTA CCTGGTGCTG GGCATGTTCA TGGACGTGCT GTCGATGCAG
GTGGCGACCA TTCCGATCAC CTATCCGATC GCCACCGCGC TGGGGGTCGA TCCGATCTGG
TTCGGCATCT TCATCGTGCT GATGTGCGAG CTCGGGCTCA TCACGCCGCC GGTCGGCATG
AACCTGTTCG TGGTGCACGG CATCCGGCCC GACAGGGGCG GCATCGAGGA CGCGATCTAC
GGCGCGCTGC CCTATGCGCT GATCATGATC CTGTTCACCC TGCTGCTGCT GGCCGTGCCG
CAGCTGGTGA CCTGGCTGCC GGGCCACATG TGA
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| Protein sequence | MNLFVIGLAF LAMLGMMLVG MPIAVSMALV GIVGGIAAYG APFMDSIAPV VWGVQNENLL
TSVPLFVLLG ELLLRSGIAD RMYIALSAWL GRLPGGLLHT NIGSCALFAA TSGSSVATAA
TVGTVALPSL HRRGYSMRAS LGSLAAGGTL GILIPPSVNM IVYGSLTNNS IGKLFIAGII
PGLLLTGFFM LWIAGSSLAS GNAMREPKVP LKARIRALVH LVPPAVVFGI VMGSLYFGIA
TAAESAALGV IAALGFVLHS GKLSWELMRN CFVSTARVSG MILLIVVAAF VLNLTVSLTG
VAEAMTKWVS GLGLSATGLI LALMLFYLVL GMFMDVLSMQ VATIPITYPI ATALGVDPIW
FGIFIVLMCE LGLITPPVGM NLFVVHGIRP DRGGIEDAIY GALPYALIMI LFTLLLLAVP
QLVTWLPGHM
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