| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0107 |
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| Symbol | |
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| ID | 7971643 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 105660 |
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| End bp | 107675 |
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| Gene Length | 2016 bp |
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| Protein Length | 671 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644790710 |
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| Product | acetoacetyl-CoA synthetase |
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| Protein accession | YP_002942036 |
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| Protein GI | 239813126 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
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| TIGRFAM ID | [TIGR01217] acetoacetyl-CoA synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.924378 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCGCTC CCAACATTCC CCAGATCCGC CTCTACCAGG ACTGGCTGCG CGAGCAGCGC
GGCCTGTCCT TCGACACCTA TGACGCGCTG TGGCGCTGGT CCGTGACCGA TCTCGACGCC
TTCTGGCAGA GCATCTGGGA CTACATGGGC ATCGTGTCGC CCACGCCGCA CACGGCGGTG
CTGGCCGACG ACCGCATGCC CGGCGCCACG TGGTTTCCGG GCGCCGAGGT CAACTACGCG
CGCGAGGTGC TGCGCCATGC CGATGCGGCG CATGCGGCCG GCCTGCCGGC CATCGTGAGC
GACAACGAGC TGGGCGAAGT GCGCGAGATG CCCTGGCCCG AGCTGCGCCG GCAGGTGGCC
TCGGTGGCGC TCACGCTCAA GTCGCTGGGT GTGCAGCGCG GCGACCGCGT GGCCGCCTAC
CTGCCCAATG TGCCCGAGAC CATGGTGGCC TTTCTCGCGT GTTCGAGCAT CGGCGCGGTG
TGGAGCGTGT GCGCGCCCGA CATGGGCACG GCCGCCGTGG TCGACCGTTT CCGCCAGATC
GAGCCCAAGC TGCTGATCGC CGCCGACGGC GTGCACTACG GTGCCAAGCC CATCGACCGC
AGCGCGGTGG TGCAGGAGCT GCGCGATGCG CTGCCCAGCG TGCAGAAGCT GCTGTTGCTG
CGGACGCCCC ATGCCGCGCA GCAGCTCGCC GCCGACGCCG ACTGGCAGGC CGCCAGCGCG
CGCCGCGACG CCGAGGTGGC GGCCTTCGAG CCCGAATGGC TGCCCTTCGA CCACCCGATC
TGGATCGTCT ATTCGAGCGG CACCACCGGC CTGCCCAAGC CCATCGTGCA CGGGCAGGGC
GGCATCATCA TGACGATGTA CGCCTGCGGC CTGCACAACG ACATCGGCGC GAGCTACGGC
GCCAACAACT TCGACGAGCG CTTCCACTGG TACAGCTCGA CCGGCTGGGT CATGTGGAAC
TGCCAGCTCG CGGGCCTGGC CTTCGGCGCG ACCATCGTCA TCTACGACGG CCATCCGGCC
GGCAGCAAGG AGAAGCCCGA CTGGGCCGTG CTGTGGCGCT TCGTCGCGAA GCACCGCATC
ACTTTCTTCG GTGCCGGCGC GGCCTACTTC ACCAACTGCA TGAAGGCCGG CGTGGTCGCG
GCCGAGTGCG GCGACCTGTC GCGCGTGCGC GCGCTCGGCA GCACCGGCTC GCCGCTGTCG
GAAGAGGTGC AGCGCTGGGG CACGGCGCAG CTGCTGGCCG CGGGCGCGAG CAGCGTGTGG
TGGTGCAACA TTTCCGGCGG CACGGATTTT TGCGGCGCCT TCGTCGGCGG CAACCGCGAG
CTGCCCGAAG TGCCCGGGCA GATGCAGTGC CGCCAGATCG GCCATGCGGT GGAAGCCTGG
AACGAAGACG GCAAGCCCGT CATCGGCGAG GTGGGCGAGC TGGTCTGCAC GCGGCCCATC
CCATCGATGC CGCTGTACTT CTGGGGCGAC GAAGGCAACG CGCGCTACCT GTCGAGCTAC
TTCGACACCT ACCCCGGCGT CTGGCGCCAC GGCGACTGGA TCAGGATCGG CGAGGACGGC
GGCTGCATCA TCTACGGCCG CAGCGACGCC ACCATCAACC GCCTGGGCCT GCGCATGGGC
ACCAGCGAGA TCTACAGCGC CGTCGAGGCG CTGCCCGAAG TGCTCGACTC CATGGTGGTC
GACCTCGAAT ACCTGGGCCG CGAAAGCTAC ATGCCGCTGT TCGTGGTGCT GCGCCCCGGC
GTGGCGCTCG ACGATGCGAT GCGCGGCAAG ATCAACCACG CGATCAAGAC CTCGCTCTCG
CCGCGCTTCC TGCCCAACGA CATCTTCCAG GTGGCCGAGA TCCCGCGCAC GCTCTCGGGC
AAGAAGCAGG AGCTGCCGAT CAAGAAGCTG CTGCTGGGCC AGCCGCTTCA GAAGGTGGTC
AACCCCGAGG CCATGGCCAA CCCCGGCTCG CTCGGCTGGT ACGTGGAGTT TGCGGCGCGG
CGCGCCGCGG CCTCTCAGGG CATCAGCAGT TCGTAG
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| Protein sequence | MPAPNIPQIR LYQDWLREQR GLSFDTYDAL WRWSVTDLDA FWQSIWDYMG IVSPTPHTAV
LADDRMPGAT WFPGAEVNYA REVLRHADAA HAAGLPAIVS DNELGEVREM PWPELRRQVA
SVALTLKSLG VQRGDRVAAY LPNVPETMVA FLACSSIGAV WSVCAPDMGT AAVVDRFRQI
EPKLLIAADG VHYGAKPIDR SAVVQELRDA LPSVQKLLLL RTPHAAQQLA ADADWQAASA
RRDAEVAAFE PEWLPFDHPI WIVYSSGTTG LPKPIVHGQG GIIMTMYACG LHNDIGASYG
ANNFDERFHW YSSTGWVMWN CQLAGLAFGA TIVIYDGHPA GSKEKPDWAV LWRFVAKHRI
TFFGAGAAYF TNCMKAGVVA AECGDLSRVR ALGSTGSPLS EEVQRWGTAQ LLAAGASSVW
WCNISGGTDF CGAFVGGNRE LPEVPGQMQC RQIGHAVEAW NEDGKPVIGE VGELVCTRPI
PSMPLYFWGD EGNARYLSSY FDTYPGVWRH GDWIRIGEDG GCIIYGRSDA TINRLGLRMG
TSEIYSAVEA LPEVLDSMVV DLEYLGRESY MPLFVVLRPG VALDDAMRGK INHAIKTSLS
PRFLPNDIFQ VAEIPRTLSG KKQELPIKKL LLGQPLQKVV NPEAMANPGS LGWYVEFAAR
RAAASQGISS S
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