| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0106 |
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| Symbol | |
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| ID | 7971642 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 104832 |
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| End bp | 105560 |
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| Gene Length | 729 bp |
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| Protein Length | 242 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644790709 |
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| Product | transcriptional regulator, TetR family |
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| Protein accession | YP_002942035 |
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| Protein GI | 239813125 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3226] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.180704 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAACACCC GCACCCCGCC CGCCAGGCGA AGCGCCCACC GCGCCCCGGC CGCCGCTGCC
GAAGCCGCCC GGCCCGATCG GCGCCACGCC ATCCTGCTGG CGGCGGAAAA GCTTTTTGCG
CAGCACGGCT ACCACGCGGT CACCATCCGC CAGATCGCCG AGGAAGCGGG CGTGCCGCTG
GCGCTGGTGG GCTACTACTT CGGTCCGAAG CACGAGCTCT TCCACGCGAT CTTCGAGCAC
TGGAGCCACA GCATCGAGGA GCGGCTCGCG GGCCTGAAGG CCGTGGATAA CGACCCTGAC
GACGCGCGCA CGCTGCCTCG CATCATCGAG GCCTTCACCG GGCCGGTGCT GGCGCTGCGT
GCGAGCGCCG AGGGCGAGTA CTACGCGCTG CTGGTGGCGC GCGAGCTCTA TCACGCCACC
GAGGAAGCCG ACCGCGTGCT GCGCGGCTAC TTCGACCCGC TGGCCGAGGC CTACATCGAC
GCGCTGCACG TCGCGCTGCC GCATGCCACG CGCGGGCAGG CCGCCTGGGG CTACCAGTTC
TCGCTCGGGG CGCTGCTGCA CCACCTGAAC GACAGCCGCA TCGAGCGGCT CTCGCGCGGC
GAGAACCGGC GCAGCGATCC GGCCGTGGCG CCGATGCTGG TGAACTTCAT CGTCGGCGGG
CTGCGCGCCG CGCTGCCGCG ACCCAAGGCC CCGCAGAAGA AAACCACCCC CAGGAGACAG
AAGACATGA
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| Protein sequence | MNTRTPPARR SAHRAPAAAA EAARPDRRHA ILLAAEKLFA QHGYHAVTIR QIAEEAGVPL
ALVGYYFGPK HELFHAIFEH WSHSIEERLA GLKAVDNDPD DARTLPRIIE AFTGPVLALR
ASAEGEYYAL LVARELYHAT EEADRVLRGY FDPLAEAYID ALHVALPHAT RGQAAWGYQF
SLGALLHHLN DSRIERLSRG ENRRSDPAVA PMLVNFIVGG LRAALPRPKA PQKKTTPRRQ
KT
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