| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0059 |
|---|
| Symbol | |
|---|
| ID | 7974017 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 57699 |
|---|
| End bp | 58130 |
|---|
| Gene Length | 432 bp |
|---|
| Protein Length | 143 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644790661 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002941988 |
|---|
| Protein GI | 239813078 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5455] Predicted integral membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCATCA AGTCAAAGAG CATGGCCGTC GCTGCTGCGG CGCTCGCGAT GTGCATGGCA
GCGGGGAGCG CCTTCGCGCA AGGCCGCGGC CATGACGGCG ACCACGACAA CCGCGGCAAC
GGCCGCTACG AACAGCAGCA CCGCGACTTC GACCGGCACG ACGATCGCCG CGGCGACCGC
TATGGCCGCG AGGACTATCG CCCCGGCCGC CAGTTCGATC GCCGCGGCTA TCCGCAGCCG
CACGCGGAAT GGCGCCGCGG CGGGCGCGTG CCCAGCGAAT ACCGCGGCCG CAACTACGTG
GTGAACGACT GGCGCAGCTA TCGCCTGCAG CAGCCGCCGC GCGGCTACCA GTGGGTGGGC
GTGGGCGGCG ACTACGTGCT CGCGGCCATT GCGACCGGCG TGATCGCGCA GATCATCGTG
GGCAGCCAGT AA
|
|---|
| Protein sequence | MIIKSKSMAV AAAALAMCMA AGSAFAQGRG HDGDHDNRGN GRYEQQHRDF DRHDDRRGDR
YGREDYRPGR QFDRRGYPQP HAEWRRGGRV PSEYRGRNYV VNDWRSYRLQ QPPRGYQWVG
VGGDYVLAAI ATGVIAQIIV GSQ
|
|---|
| |