| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0056 |
|---|
| Symbol | |
|---|
| ID | 7974014 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 56158 |
|---|
| End bp | 56676 |
|---|
| Gene Length | 519 bp |
|---|
| Protein Length | 172 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644790658 |
|---|
| Product | adenylate cyclase |
|---|
| Protein accession | YP_002941985 |
|---|
| Protein GI | 239813075 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1437] Adenylate cyclase, class 2 (thermophilic) |
|---|
| TIGRFAM ID | [TIGR00318] adenylyl cyclase CyaB, putative |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGAA ACATAGAGAT CAAGGCCCGC ATCGACAGCG TCGAACGCGT GGCACTCATC
GCCGCAAAGC TCGCCGATTC AGGCCCGATC GAAATCGCGC AGGACGACAC TTTCTTCCGC
TGCGACAACA ACGCCGACCG CCTCAAGCTG CGCACCTTCG CGCCCGACCG CGCCGAGCTG
ATCTTCTATC GCCGCGCCAA CAGCAGCGGC CCGAAGGAAT CGTTCTACCT GATCTCGCCC
ACCACCACGC CCGACGCGCT GCGCGAATCG CTCACGCTCG CCTGGGGCCA GGCCGGGCGC
GTGCGCAAGC AGCGAAGGCT CTTCATCGTG GGCCGCACGC GCGTGCACCT CGACCGCGTG
GAGGGCCTGG GCGAATTTCT CGAACTCGAG GTGGTGCTGA AAGATGGCGA GCCCGCCGAG
GTTGGCACGG CCGAAGCGCA TGCGCTCATG GCGCAGCTGG GCATTGCGTC CGAGCAGCTC
GTGCAGGGTG CCTACGTCGA CCTGCTGCAG GCAGCCTGA
|
|---|
| Protein sequence | MARNIEIKAR IDSVERVALI AAKLADSGPI EIAQDDTFFR CDNNADRLKL RTFAPDRAEL
IFYRRANSSG PKESFYLISP TTTPDALRES LTLAWGQAGR VRKQRRLFIV GRTRVHLDRV
EGLGEFLELE VVLKDGEPAE VGTAEAHALM AQLGIASEQL VQGAYVDLLQ AA
|
|---|
| |