| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0052 |
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| Symbol | |
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| ID | 7974010 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 52820 |
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| End bp | 54244 |
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| Gene Length | 1425 bp |
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| Protein Length | 474 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644790654 |
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| Product | FAD linked oxidase domain protein |
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| Protein accession | YP_002941981 |
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| Protein GI | 239813071 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
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| TIGRFAM ID | [TIGR00387] glycolate oxidase, subunit GlcD |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGCCC CGACCCCAAC CTCGCACCTG CTGCCGGAGC TTCATCTGCG CAATGTGCCC
GACAGCCTGA TCGAGGGCCT GAAAGCGCGC TTCGGCAGCA ACTGTTCCAC GGCCATGGCC
GTGCGCACCC AGCATGGCCG CGACGAGTCC TCGTTCGATG CGCCGCCCCC CTCGGCCGTG
GTGTTTGCCG AAAGCACGCA GGACGTGGCC GACGCGGTGA AGCTCGCAAG CGAGCACAGC
GTGCCGGTCA TTCCCTTTGG CGTGGGCTCG TCGCTCGAAG GCCACCTGCT GGCGGTGCAG
GGCGGCATCA GCATCGACGT CTCGCGCATG AACCGCGTAC TGTCGGTCAA TGCCGACGAC
CTCACCGTGA CCGTGCAGCC CGGCGTCACG CGCAAGCAGC TCAATGACGA GATCAAGAGC
ACGGGCCTGT TCTTTCCCAT CGATCCGGGT GCGGACGCTT CCATCGGCGG CATGACCGCC
ACGCGCGCGA GCGGCACGAA CGCGGTGCGC TACGGCACCA TGCGCGAGAA CGTGCTGGCG
CTCGAAGTGG TCACGGCCAG CGGCGACGTG ATCCGCACCG GCACGCGCGC GAAGAAGTCG
TCGGCCGGCT ACGACCTCAC GCGCCTCATG GTGGGCAGCG AGGGCACGCT GGGCGTGGTC
ACCGAAGTCA CGCTGCGCAT CTACCCGCTG CCCGAGGCGG TGTCGGCCGC GATCTGCTCG
TTCCCGAGCA TCGAGGCCGC GGTGCGCACC ACCATCGAGA CCATCCAGCT CGGCGTGCCG
ATTGCGCGCG TGGAGCTGAT CGACGTGAAC ACGGTGCGCA TGGTCAACAC CTACGCCAAG
CTCGACCTGC GCGAAGAGCC GATGCTGCTG ATGGAATTCC ACGGCTCGCC GGCCGGCGTG
AAGGAGCAGG CCGAGACGGT GCAGGAGCTC GCGAGCGGCC ATGGCGGCAA CGCCTTCGAA
TGGGCCAGCA CGCCGGAAGA GCGCACACGC CTGTGGACCG CGCGGCACAA CGCCTACTTT
GCGGCTGTGC AGTCGCGCCC CGGCTGCCGC GTGATCTCGA CCGACACCTG CGTGCCGATC
TCGCGCCTGG CCGACTGCCT GCTCGACTCC GTGGCCGAAG CCGATGCCAG CGGCATCCCC
TACTTCCTGG TCGGCCACGT GGGCGACGGC AATTTCCACT TCGGCTACCT GCTCGACCCG
AACATCCCCG AAGAGCGCGT GAAGGCCGAG GAACTGAACC ATTCGCTCGT GAGCCGCGCA
CTGGCGCTCG AGGGCACCTG CACCGGCGAG CACGGCGTGG GGCTGCACAA GATGGACTTC
CTGGTGACGG AAGCTGGCGT GGGTGCGATC GACATGATGC GCACGATCAA GCGCGCGCTC
GACCCGAAGA ACATCATGAA TCCCGGAAAG ATCTTCGCGC TCTGA
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| Protein sequence | MNAPTPTSHL LPELHLRNVP DSLIEGLKAR FGSNCSTAMA VRTQHGRDES SFDAPPPSAV
VFAESTQDVA DAVKLASEHS VPVIPFGVGS SLEGHLLAVQ GGISIDVSRM NRVLSVNADD
LTVTVQPGVT RKQLNDEIKS TGLFFPIDPG ADASIGGMTA TRASGTNAVR YGTMRENVLA
LEVVTASGDV IRTGTRAKKS SAGYDLTRLM VGSEGTLGVV TEVTLRIYPL PEAVSAAICS
FPSIEAAVRT TIETIQLGVP IARVELIDVN TVRMVNTYAK LDLREEPMLL MEFHGSPAGV
KEQAETVQEL ASGHGGNAFE WASTPEERTR LWTARHNAYF AAVQSRPGCR VISTDTCVPI
SRLADCLLDS VAEADASGIP YFLVGHVGDG NFHFGYLLDP NIPEERVKAE ELNHSLVSRA
LALEGTCTGE HGVGLHKMDF LVTEAGVGAI DMMRTIKRAL DPKNIMNPGK IFAL
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