Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0051 |
Symbol | |
ID | 7974009 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 51838 |
End bp | 52737 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644790653 |
Product | peptidoglycan-binding domain 1 protein |
Protein accession | YP_002941980 |
Protein GI | 239813070 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGTTCA GGACAAGGTT TCCGTTCGCG GCCGTGGCCG TCGGCGCACT GCTGCTGACC GGTTGCGCGA CCACCGACAT GCAGATGGGC AGCCAGTCGG CCAAGACCAT GGCCACGGGC AGCGCCGCGG GTTCCGCCAC CGCCGGCGAA AGCAGCCAGC TCGAGCGCTG CGAATCGCCG CTGGGCACCG TCTCGCTGAT CGAGAACGTG AATGCCGGCT GGTACACCAT CCTCACCGGC GAGTACCGCC TGCCGCCCAC GGCCAACCTG CTGCGCCTCT TGGTGCAGCA GTCGAACTGC TTCGTGGTGG TGGAGCGCGG CGCGGCCGGC ATGAACGCGA TGACGCGCGA GCGCGCGCTC ATGCAGTCGG GCGAAATGCG CGGCGGCAGC AACTTCGGCC GCGGCCAGAT GGTGGCGTCC GACTACGGCC TGTCGCCCGA GATCGTGTTC AGCAACAGCG ATGCCGGCGG CATCGGCGGC GCGCTGGGCG GGCTGGTCGG CGGCGGCCGG GGCCGCGCGC TGGCCACCAT CGGCGGCAAC ATGCAGACCA AGGAAGCCAG CGCGCTGCTG ACGCTCATCG ACAACCGCTC GGGCGTGCAG GTCGCGGCTT CGGAAGGCAG CGCCTCCAAG ACCGATTTCG GCGCCTTCGG TGCACTGGCC GGCCGCAGTG CCGGCGGCGG CCTCGGCGGC TACACCAACA CGGCGCAAGG CAAGGTGATT GCCGCGGCCT TCATGGACGC GTTCAACCAG ATGGTCCGTT CGCTGCGCAG CTACAAGGCG CAGACGGTGC GCGGCCAGGG CCTGGGCGGC GGCGGCCGGC TCGGCGTGGA TGGCGGCGCG GCACCGTCGC AGACCTACGT GCCGGCCGAG CAGCCGGCGC CCGCACGCCG CCGCAGGTAA
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Protein sequence | MKFRTRFPFA AVAVGALLLT GCATTDMQMG SQSAKTMATG SAAGSATAGE SSQLERCESP LGTVSLIENV NAGWYTILTG EYRLPPTANL LRLLVQQSNC FVVVERGAAG MNAMTRERAL MQSGEMRGGS NFGRGQMVAS DYGLSPEIVF SNSDAGGIGG ALGGLVGGGR GRALATIGGN MQTKEASALL TLIDNRSGVQ VAASEGSASK TDFGAFGALA GRSAGGGLGG YTNTAQGKVI AAAFMDAFNQ MVRSLRSYKA QTVRGQGLGG GGRLGVDGGA APSQTYVPAE QPAPARRRR
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