Gene Vapar_0046 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0046 
SymbolgidB 
ID7974004 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp47938 
End bp48579 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content67% 
IMG OID644790648 
Product16S rRNA methyltransferase GidB 
Protein accessionYP_002941975 
Protein GI239813065 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0357] Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division 
TIGRFAM ID[TIGR00138] 16S rRNA methyltransferase GidB 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGCGC CCATCGACAC GCTGCGCCAG GGCGCGGCAG CCCTGGGCAC GGCCTTGTCC 
GATGCGCAGG CGGAACAGCT GCTGGCCTAC GGCACGCTGA TGCTCAAGTG GAACAAGGTC
TACAACCTCA CGGCGCTGCG CGATCCGGCC AGCGTGCTGA CGCACCATCT GCTCGACAGC
CTCGCGGCCG TGGCGCCGCT GCAGCGCGAA TGGGCAGGGA AGGGCAAGCT GCTCGACGTG
GGATCGGGCG GTGGCCTGCC GGGCGTGGTG ATTGCCGTCC TGCGGCCAGA CCTTGAGGTG
AGCTGCCTCG ACGCCGTGGC CAAGAAGGCG GCCTTCGTCC AGCAGGTGGC GGCCGAGCTC
GAATTGCCCA ACCTGCGCGG TCTGCATGCG CGCGTCGAAT CGCTGACGGG CAGCTATGAA
GTCATCAGCT CCCGGGCCTT TGCCTCGCTG CCTGATTTCT TCAACGGTTC GCGGCACCTG
CTCGCGCCGG GCGGTGTCTG GCTGGCCATG AAAGGCAAGA TGCCCACCGA TGAGCTCGCC
GCCTTGCCTC AGGGTATCGC GGTGTTTCAC GTGGAACAAT TGACTGTTCC CGGCCTAGAC
GCCGAGCGCT GCATCGTTTG GGCGCGCCAG GAAGCGGCCT GA
 
Protein sequence
MSAPIDTLRQ GAAALGTALS DAQAEQLLAY GTLMLKWNKV YNLTALRDPA SVLTHHLLDS 
LAAVAPLQRE WAGKGKLLDV GSGGGLPGVV IAVLRPDLEV SCLDAVAKKA AFVQQVAAEL
ELPNLRGLHA RVESLTGSYE VISSRAFASL PDFFNGSRHL LAPGGVWLAM KGKMPTDELA
ALPQGIAVFH VEQLTVPGLD AERCIVWARQ EAA