Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0046 |
Symbol | gidB |
ID | 7974004 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 47938 |
End bp | 48579 |
Gene Length | 642 bp |
Protein Length | 213 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644790648 |
Product | 16S rRNA methyltransferase GidB |
Protein accession | YP_002941975 |
Protein GI | 239813065 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0357] Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division |
TIGRFAM ID | [TIGR00138] 16S rRNA methyltransferase GidB |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGCGC CCATCGACAC GCTGCGCCAG GGCGCGGCAG CCCTGGGCAC GGCCTTGTCC GATGCGCAGG CGGAACAGCT GCTGGCCTAC GGCACGCTGA TGCTCAAGTG GAACAAGGTC TACAACCTCA CGGCGCTGCG CGATCCGGCC AGCGTGCTGA CGCACCATCT GCTCGACAGC CTCGCGGCCG TGGCGCCGCT GCAGCGCGAA TGGGCAGGGA AGGGCAAGCT GCTCGACGTG GGATCGGGCG GTGGCCTGCC GGGCGTGGTG ATTGCCGTCC TGCGGCCAGA CCTTGAGGTG AGCTGCCTCG ACGCCGTGGC CAAGAAGGCG GCCTTCGTCC AGCAGGTGGC GGCCGAGCTC GAATTGCCCA ACCTGCGCGG TCTGCATGCG CGCGTCGAAT CGCTGACGGG CAGCTATGAA GTCATCAGCT CCCGGGCCTT TGCCTCGCTG CCTGATTTCT TCAACGGTTC GCGGCACCTG CTCGCGCCGG GCGGTGTCTG GCTGGCCATG AAAGGCAAGA TGCCCACCGA TGAGCTCGCC GCCTTGCCTC AGGGTATCGC GGTGTTTCAC GTGGAACAAT TGACTGTTCC CGGCCTAGAC GCCGAGCGCT GCATCGTTTG GGCGCGCCAG GAAGCGGCCT GA
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Protein sequence | MSAPIDTLRQ GAAALGTALS DAQAEQLLAY GTLMLKWNKV YNLTALRDPA SVLTHHLLDS LAAVAPLQRE WAGKGKLLDV GSGGGLPGVV IAVLRPDLEV SCLDAVAKKA AFVQQVAAEL ELPNLRGLHA RVESLTGSYE VISSRAFASL PDFFNGSRHL LAPGGVWLAM KGKMPTDELA ALPQGIAVFH VEQLTVPGLD AERCIVWARQ EAA
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