Gene Vapar_0028 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0028 
Symbol 
ID7973986 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp31014 
End bp31973 
Gene Length960 bp 
Protein Length319 aa 
Translation table11 
GC content67% 
IMG OID644790630 
Producthypothetical protein 
Protein accessionYP_002941957 
Protein GI239813047 
COG category[S] Function unknown 
COG ID[COG3597] Uncharacterized protein/domain associated with GTPases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGACACCTT CCGAAACCCG GGCCATCGTG TCCCTCAGCC TGCTGGCCGC CTTTGTCGAC 
GGCGAGAAGC ACGAGCGCGA ACGCGCCGAG ATCAAGCGCA TTGCCGAAGG TCTTTCGCAA
GCCGACGGCA TGAACCTGCC CACGCTCTAC CAGGACGTGC TGATGAAGCG CGTCTCGCTG
GCCTCGGTCG CGGGCGAGCT CAAGAGCACG GAATCGAAGC AGCTGGCCTA CGAGATGGCG
GTGTGCGTGT GCGATGCGGA TGGCACGCAG TCCGATGCCG AGCGCATGTT CCTGGCGGAC
GTGCGCAGCT CGCTCGGGCT CGATGCCTCG GCGGCGCAGT TCTCGCAGCA GGCGGAAGAG
ATTGCCGCGG CGGTGCCGGC GGCGGCCGCC GGTACGGCCA CGGCCGTGGC GCCCGCCGCT
GTTGCTGCTG CTGCGCCATC GCCCGACAGC GCGGAGCTCG ACAAGTCGAT CCTCAACGCC
TCCATCCTCA ACGGCGCGCT CGAACTGCTG CCCGAGACGC TCTCGACCAT GGCGATCATT
CCGCTGCAGA TGAAGCTGGT CTACCGCATC GGCAAGGCCT ACGGCTACGA GCTCGACAGC
GGCCATGTGA AGGATTTTCT GGCGACGGTC GGCGTGGGCC TGACTTCGCA GTACCTGGAG
CAGGCCGGGC GCAAGCTGCT TGGCGGCCTG CTCGGCAAGA TGGGTGGCGG TTTGTTGCGC
GGCCTCGGCA ACCAGGCGGT GAGCTCGGGC ATGAGCTTCG CCTCGACCTA TGCGCTCGGG
CACGTGGCCA AGCGCTACTA CGCCGGCGGC CGCACGCTCT CGGCGCAGAT GCTCAAGGAA
ACTTTCTCGG GCGTGGTGCA GGAAGGCAAG AGCCTGCAGA CCCAGTACCT GCCGGCGATC
CAGGAAAAGG CCCGCACCCT CGACGCCGGA AAAGTGCTGT CGCTCGTCAG GGGAGCGTGA
 
Protein sequence
MTPSETRAIV SLSLLAAFVD GEKHERERAE IKRIAEGLSQ ADGMNLPTLY QDVLMKRVSL 
ASVAGELKST ESKQLAYEMA VCVCDADGTQ SDAERMFLAD VRSSLGLDAS AAQFSQQAEE
IAAAVPAAAA GTATAVAPAA VAAAAPSPDS AELDKSILNA SILNGALELL PETLSTMAII
PLQMKLVYRI GKAYGYELDS GHVKDFLATV GVGLTSQYLE QAGRKLLGGL LGKMGGGLLR
GLGNQAVSSG MSFASTYALG HVAKRYYAGG RTLSAQMLKE TFSGVVQEGK SLQTQYLPAI
QEKARTLDAG KVLSLVRGA