| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0022 |
|---|
| Symbol | |
|---|
| ID | 7973980 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 21305 |
|---|
| End bp | 23380 |
|---|
| Gene Length | 2076 bp |
|---|
| Protein Length | 691 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644790624 |
|---|
| Product | Vault protein inter-alpha-trypsin domain protein |
|---|
| Protein accession | YP_002941951 |
|---|
| Protein GI | 239813041 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2304] Uncharacterized protein containing a von Willebrand factor type A (vWA) domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.112667 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATGCCC ACACCTCCAC CCGTCCCGGC CGCTGGCTCT GGCTCGCCAC CGTGAGCCTG
GCCACGGCGG GCTTCGTCGC GCTCAGCCTC AACCCCGTGC ATGCCCAGGA AGCACCGGGC
CCGCGGCTGA AGACCGAGAG CCCGTACTTC TTCGTGAAGA GCGACGATCC CGCGGTCGAC
CGCCTGCCGC TCAAGGCCAC CGAGGTGGCG GTGAAGATCT CGGGCGTCAT TGCCGACGTG
ACCGTCACGC AGACCTACCG CAACGAAGGC CAGCGCGCCA TCGAGGCCAA GTACGTGTTC
CCCGGCTCGA CCAAGGCGGC CGTGAGCGGC CTCAACGTGC GCCTGGCCGA CCGGCTGATC
ACCGCGCAGA TCCGCGAGAA GCAGCAGGCG CAGATCGAAT ACGACAGCGC CAAGAAGGAA
GGCAAGACCG CCGCGCTGCT CGAGCAGCAC CTGCCCAACG TGTTCCAGAT GAACGTCGCC
AACATCCTGC CGGGCGACGA CGTGAAGGTG GAGCTGCGCT ATACCGAACT GCTGGTGCCG
CAGTCGGGCA ACTACGCGTT CGTCTTTCCC ACCGTGGTGG GCCCGCGCTA CAACAGCCCG
CAGTCGGAGA ACGCCCAGGC GAAGTGGGTG GCGCAGCCCA CGCTGCGCGC GGACGTGGCG
CCGAACACCA GCTTCAGGCT CAAGGCCAGC ATCGACACGC CCATGGGGCT GAAGGAGGTG
CGCTCCTCGT CCCACACCAT CGAGGTGAAG AAGAGCGATG AAGACCGGCA CGCCGACATC
GTGCTCGCGG CCGATGGCCG GCCCGCGGAC AACCGCGACT TCGTGCTCGA CTACCGCCTT
GCGGGCGAAA GGATCGAATC GGGCCTGATG CTCTACAAGG GCCAGAACAC CGATGGCAGC
GCCGAGAACT TCTTCCTCGC GATGGTCGAG CCGCCCAAGG CCGTGGCCGC CAGCGCGATC
TCGCCGCGCG ACTACATCTT CGTGGTCGAC ATCTCGGGGT CGATGCACGG CTTTCCGCTC
GACACCGCCA AGACGGTGCT CGAACGCCTG ATTGGCGGCC TCAGGCCCAG CGACACCTTC
AACGTGCTGC TGTTCTCGGG CAGCAACAAG ATGCTCTCGC CCCGATCGGT GCCGGCCACG
CGCGCCAACA TCGAGCAGGC GCTGGCCACC ATCCAGAACT ACGGCGGCAG CGGCAGCACC
GAGCTGATTC CCGCGCTCAA GCGCGTCTAC GCCGAGCCGA AGGAGGAGAA GGTCTCGCGC
ACCGTGGTGC TGGTGACGGA CGGCTACGTG AGCGTGGAGC GCGAGGCTTT CGAGCTGGTG
CGCAAGAACC TTTCGAAGGC CAATGTGTTC GCCTTCGGCA TCGGGTCGTC GGTCAACCGC
AGCCTGATGG AAGGCATTGC GCGCGCCGGC ATGGGCGAGC CCTTCATCAT CACCGACCCG
ATCCAGGCGC CCGAGCAGGC CGCGCGCTTC CGCCGCATGG TGGAGTCGCC GGTGCTCACC
AATGTGAAGG TGACTTTCGG CGGGCTCGAC GTGTACGACG TGGAACCGCA GGCACTGCCC
GACGTGCTGG GCGAGCGCCC GGTGATCGTG TTCGGCAAGT GGCGCGCGGA CGCGGAGGGC
AAGGCCAAGG GCCGCGTGAT CGTCGAAGGC CAGGGCGCCA ACGGCCCGTA CCGCCAGGAG
CTGCGCATCG ACCCGCAACT GCGCCAGGAC ACGGCCGCGC TGCGCACGCT GTGGGCGCGC
CACCGCATCC AGAGCCTGAG CGACCAGGAA ACGCTCGAGG GCGGCAGCGC GTTCAAGGAG
CGCATCACCG AGCTCGGCCT GAAGTACAGC CTGCTGACCC AGTACACCAG CTTCATCGCC
GTCGACAAGG TGGTGCGCAA CCCCGCGCCG CAGAACAGCG TGGGCGTGAA CCAGCCGCTG
CCATTGCCGC AGGGCGTGAG CGAACTCGCA CTCGGCGCCG AGGTGCCGAG CACGCCGGAA
CCCGAGACGC TGGGCGCGAT TGCCGTGGTG CTGTCGATGC TCGCGATGCT GCGCCGCCGC
GCGCGCCGCA ACGACCCGCG CCGCTTCACG GCCTGA
|
|---|
| Protein sequence | MDAHTSTRPG RWLWLATVSL ATAGFVALSL NPVHAQEAPG PRLKTESPYF FVKSDDPAVD
RLPLKATEVA VKISGVIADV TVTQTYRNEG QRAIEAKYVF PGSTKAAVSG LNVRLADRLI
TAQIREKQQA QIEYDSAKKE GKTAALLEQH LPNVFQMNVA NILPGDDVKV ELRYTELLVP
QSGNYAFVFP TVVGPRYNSP QSENAQAKWV AQPTLRADVA PNTSFRLKAS IDTPMGLKEV
RSSSHTIEVK KSDEDRHADI VLAADGRPAD NRDFVLDYRL AGERIESGLM LYKGQNTDGS
AENFFLAMVE PPKAVAASAI SPRDYIFVVD ISGSMHGFPL DTAKTVLERL IGGLRPSDTF
NVLLFSGSNK MLSPRSVPAT RANIEQALAT IQNYGGSGST ELIPALKRVY AEPKEEKVSR
TVVLVTDGYV SVEREAFELV RKNLSKANVF AFGIGSSVNR SLMEGIARAG MGEPFIITDP
IQAPEQAARF RRMVESPVLT NVKVTFGGLD VYDVEPQALP DVLGERPVIV FGKWRADAEG
KAKGRVIVEG QGANGPYRQE LRIDPQLRQD TAALRTLWAR HRIQSLSDQE TLEGGSAFKE
RITELGLKYS LLTQYTSFIA VDKVVRNPAP QNSVGVNQPL PLPQGVSELA LGAEVPSTPE
PETLGAIAVV LSMLAMLRRR ARRNDPRRFT A
|
|---|
| |