| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0021 |
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| Symbol | |
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| ID | 7973979 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 20357 |
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| End bp | 21286 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 644790623 |
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| Product | hypothetical protein |
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| Protein accession | YP_002941950 |
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| Protein GI | 239813040 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02602] eight transmembrane protein EpsH (proposed exosortase) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00770996 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCATTGG CTGCACTCGC CCATCGCCAT CCGCGCATCG TGGATTGGGG CATCCACGTC
GACCGCGCAC CGGCTGCCGG CTGGCTCGCA CTGCAATTCG CCGCGCTCGC GCCGACCTGG
GCCTGGATGG CCCGGCGGCT GCGCGACGGT TCCGACGATC CGCTGGGCCT GCTGGCACTG
GCTGCCCTGG CCGCGCTGGC TTGGCATTGC CGGCGCGAAT TGCGCGCTGC GCCGCAGCTG
GGCTGGCTGG CACTGGCAGG CGCCGGCACC GTGCTGGCGA CCGCGCTGCG CACGGGGCTC
GGCGCCCTGC CCGCGCTGCC GCCGCTCGCC ACGGGCCTGG TGGCCGTGCT GGCGCTGGCC
TGCGGCCTGC TGGCCTTCCT GCCGCGGCGC GTCGCCGCGC TGCCGGTGGC CGGCCTGGCG
GTGCTCGCGC TGCCGCTGCT GTCGTCGCTG CAGTTCTATG CGGGCTATCC GCTGCGCGTG
GTCACGGCCG AGGCGAGCCG CTGGCTGCTG GCACCGGGCT TCAGCGTGGC GCGCGAGGGA
AGCAGCCTGG TGGTCGATGG CCGGCTGGTG ATCGTCGACG CGCCGTGCTC GGGCGTGCAG
ATGGTGTGGC TCGGCTACTT CACGGCCTGC GCGGTGGCGC TCTGGGCCCG CCGCAGCGAC
CGCGGCTTCC TGCGCCGGCT GCCGATGGTC GGCCTCATGG TGCTGGGCGG CAACATCCTG
CGCAACAGCA TGCTGATCGC GTTCGAAGGC GCGGGCCATC CGCTCGCGCC CTGGGCGCAC
AACCTGCTCG GGCTGTTGAT TCTGGCCGCG GTGTGCGGCG GCATCGCCCG CCTGATGGTG
CCGGTGCGCA CCGAGCCCGC GTTCGCCGAC CGGCCGATCC CGGGCCTGAT CACCACGCAA
GGAGGCCGCC ATGTCGACAC GGTTCTTTGA
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| Protein sequence | MSLAALAHRH PRIVDWGIHV DRAPAAGWLA LQFAALAPTW AWMARRLRDG SDDPLGLLAL
AALAALAWHC RRELRAAPQL GWLALAGAGT VLATALRTGL GALPALPPLA TGLVAVLALA
CGLLAFLPRR VAALPVAGLA VLALPLLSSL QFYAGYPLRV VTAEASRWLL APGFSVAREG
SSLVVDGRLV IVDAPCSGVQ MVWLGYFTAC AVALWARRSD RGFLRRLPMV GLMVLGGNIL
RNSMLIAFEG AGHPLAPWAH NLLGLLILAA VCGGIARLMV PVRTEPAFAD RPIPGLITTQ
GGRHVDTVL
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