Gene Vapar_0020 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0020 
Symbol 
ID7973978 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp19807 
End bp20376 
Gene Length570 bp 
Protein Length189 aa 
Translation table11 
GC content66% 
IMG OID644790622 
Producthypothetical protein 
Protein accessionYP_002941949 
Protein GI239813039 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.00154703 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGACAC GGTTCTTTGA AGTCCTGTTT GCCAACCATT TCATCAACCG CATCGGCCAC 
AAGACCGCCT TTGCGCTCCT GATGCTGCTG TGCATGCTGT GGTCGACCGC GGCGGCGCTG 
CGTGCGCCGC CCGAACCCTC GATGGCCATG GCCTCGCACG AATGGCCGAG CCAGTGGGAC 
GGCGTTCCAC TGCGGCCGCT GGCGCTCGGC GACGTCGAGC AGCGCTTTGC CGACCGCTTT 
CCGGGTGCCA TCGGCCGCAT GACCGACGGC ACGCAGACCA TCGTGATGCG CGCGGTGAAC 
GCCCCCACGC GCATGCTGCA TCCGGCGGCC GACTGCTACC GCGCACTGGG CTTTCGCATT 
GAACAGGCGC GGCTCGAGCG CGACGCGCAG GAGCGGCTGT GGCGCTGTTT TGTTGCGCAA 
CGGCACAGTG CGCAAAAGAT CCGTGTCTGT GAGCGCATCG TCGATGCCGA AGGCACGGCT 
TTCACCGACA CTTCAGCCTG GTACTGGGCG GCGGCCAGTG GACGCTCGAG CGGTCCGTGG 
CAAGCTGTGA CGGTGGCGAG GCCGATGTGA
 
Protein sequence
MSTRFFEVLF ANHFINRIGH KTAFALLMLL CMLWSTAAAL RAPPEPSMAM ASHEWPSQWD 
GVPLRPLALG DVEQRFADRF PGAIGRMTDG TQTIVMRAVN APTRMLHPAA DCYRALGFRI 
EQARLERDAQ ERLWRCFVAQ RHSAQKIRVC ERIVDAEGTA FTDTSAWYWA AASGRSSGPW 
QAVTVARPM