Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0001 |
Symbol | dnaA |
ID | 7972736 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 37 |
End bp | 1416 |
Gene Length | 1380 bp |
Protein Length | 459 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644790603 |
Product | chromosomal replication initiation protein |
Protein accession | YP_002941930 |
Protein GI | 239813020 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0593] ATPase involved in DNA replication initiation |
TIGRFAM ID | [TIGR00362] chromosomal replication initiator protein DnaA |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0624121 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCACTG ACGGCATCGG CGAAAGCCTC TGGCAGGCCT GCGTCGACCA GCTCGCGCAG GAGCTGTCCG AGCAGCAGTT CAACACCTGG ATCAAGCCCC TGACAGCGCA GGTCGCGGAC GACCTTTCGC GCATGACGGT GTTCGTTGCC AACCGCTTCA AGCTCGACTG GATCCGGGCC CAGTACGCCG GCAAGATCGC CGCCATGGCC GAGAAGATGT ACGGCCAGCC GGTCGCAGTT GAGTTAGCGC TTGCTCCGCG AGAAGCGCCC GTGCGCTCTG CCCCAGTTGC CGTGCTGGCC GAAACCGACG TGCCGCGCGA CGTGGCCGGC CCGGGCGAGG AGCCCGCCAA CGCCGGCTTC AAGAACCGGC TGAATTCGGG CCTCACCTTC GACACCCTGG TGGAGGGCAC GGCCAACCGC ATGGCGCGCG CCGCCGCCAT GCACGTGGCC GGCATGCCGG GCCACCTGTA CAACCCGCTG TTCATCTACG GCGGCGTCGG CCTGGGCAAG ACCCACCTGA TGCACGCGGT GGGCAACCGG CTGCTGGCCG ACCGCCCGGA TTCCAAAGTT CTCTACATCC ATGCCGAGCA GTTCGTCTCG GATGTGGTCA AAGCCTATCA GCGCAAGACT TTCGACGAGT TCAAGGAGCG CTACCACTCG CTCGACCTGC TCCTGATCGA CGATGTGCAG TTCTTCGCCA ACAAGGACCG CACGCAGGAA GAATTCTTCA ATGCGTTCGA GGCCCTGCTG GCCAAGAAGT CGCACATCGT GATGACCAGC GACACCTATC CCAAGGGCCT GGCCGACATC CACGAGCGGC TGGTCTCGCG CTTCGATTCG GGCCTCACGG TGGCCATCGA GCCGCCCGAG CTCGAAATGC GCGTGGCCAT CCTGATCAAC AAGGCGCGCG CCGAATCGGC CGAAATGCCG GAAGAAGTGG CCTTCTTCGT TGCCAAGAAC GTGCGCTCCA ACGTGCGCGA GCTCGAAGGG GCGCTGCGCA AGATCCTGGC CTACTCGCGC TTCAACCAGA AGGAGATCTC GATCGCCCTG GCGCGCGAGG CGCTGCGCGA CCTGCTGTCG ATCCAGAATC GGCAGATCTC GGTCGAAAAT ATCCAGAAGA CGGTGGCCGA CTACTACAAG ATCAAGGTCG CCGACATGTA CAGCAAGAAG CGCCCGGCCA GCATTGCGCG GCCGCGGCAG ATCGCGATGT ACCTGGCCAA GGAGCTCACG CAGAAGAGCC TGCCCGAAAT CGGCGAGCTG TTCGGCGGGC GCGACCACAC GACGGTGCTG CACGCGGTGC GCAAGATCTC GGGCGAGCGC CAGCAGCTCA CCGAACTCAA CCAGCAGCTG CACGTGCTCG AGCAGACGCT CAAGGGCTGA
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Protein sequence | MSTDGIGESL WQACVDQLAQ ELSEQQFNTW IKPLTAQVAD DLSRMTVFVA NRFKLDWIRA QYAGKIAAMA EKMYGQPVAV ELALAPREAP VRSAPVAVLA ETDVPRDVAG PGEEPANAGF KNRLNSGLTF DTLVEGTANR MARAAAMHVA GMPGHLYNPL FIYGGVGLGK THLMHAVGNR LLADRPDSKV LYIHAEQFVS DVVKAYQRKT FDEFKERYHS LDLLLIDDVQ FFANKDRTQE EFFNAFEALL AKKSHIVMTS DTYPKGLADI HERLVSRFDS GLTVAIEPPE LEMRVAILIN KARAESAEMP EEVAFFVAKN VRSNVRELEG ALRKILAYSR FNQKEISIAL AREALRDLLS IQNRQISVEN IQKTVADYYK IKVADMYSKK RPASIARPRQ IAMYLAKELT QKSLPEIGEL FGGRDHTTVL HAVRKISGER QQLTELNQQL HVLEQTLKG
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