| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_4011 |
|---|
| Symbol | |
|---|
| ID | 7861109 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | + |
|---|
| Start bp | 4435217 |
|---|
| End bp | 4436731 |
|---|
| Gene Length | 1515 bp |
|---|
| Protein Length | 504 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 82% |
|---|
| IMG OID | 643868114 |
|---|
| Product | protoporphyrinogen oxidase |
|---|
| Protein accession | YP_002884014 |
|---|
| Protein GI | 229822488 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1232] Protoporphyrinogen oxidase |
|---|
| TIGRFAM ID | [TIGR00562] protoporphyrinogen oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCTGACG ACGGCGCCCC GCGCGGGGCC GTGCCGGGTG CTGGGCGCGG CGCCGGGCCG
GGCGCCGGGC CGGGCGCCGA GCGCCGCGCC GACGCGGTGG TCGTGGGCGG CGGGATCGGC
GGGCTCGTCG CGGCGCGCGA GCTGACGCGC GCCGGGCTGA CGACGCTCGT GCTCGAGGCG
AGCGACGCCG TCGGCGGCCC GCTCCGCGCC GTCACGATCG ACGGCCCGGG CGGTGCCGCA
CTGCGCCTGG ACGCCGGCGC GGAGTCGTTC GCGACCCGGA CCGACGCCGT CGCGGCGCTC
GCCGCCGAGC TTGGCCTGGC GACGGCCGAC CCGGCCGCGG GCGGAGCCTG GGCGTGGGCC
GGCGGGCGCG CGTTCCCGCT CCCGGCCCCC GCGCTGCTGG GCATCCCCGG CCGGCCGTGG
AGCGCTGCCG TCCGCGCCGC CCTCGGTGCG GGTGGCCAGG TCCGGGCGGC CCTCGACGCC
GCGCTCCCCC GGCGGGTCGG GGCGCGCGAG CAGACGCTCG CCGGGCTGGT CCGACGGCGG
ATGGGCCGCC GCGTCGTGGA CCGTCTCGTG GGGCCGGTCG CGGGAGGCGT GCACGCGGCC
GACCCGCGCG ACCTGGCGGT GGACGCCGTG GCGCCCGGGC TCCGGGCGGC GCTCCGGCGC
ACGGGGTCGC TCGCCGGCGC CGTGCGGGCG CTGCGCAGCG GCGCGGCGCC GGGCGCGGCG
GTGCGCGGGA TCGTCGGCGG GATGCATCTG CTCCCGACGG CGCTCGCCGC CCAGGCGGGC
GAGGTCCGGC TGCGGGCGCC GGTGACGGCG ATCGAGCGGG CCGACGACGG GTGGGAGGTG
GTCGTCGCCG GCGGCCGGGT CCGCACGCCG CGGGTGGTGC TCGCCACCGA CGCCGCCACC
GCGGCCGCGC TGCTCGCGCC GCACACCCGT CTCGACGACG GCGACGTGTC CGCCGTCGCC
CCGGATCGGG CCGCGGACAT CGCGCTCGTC ACGCTCGTCC TGCGCACCGA CGAGCTCGCC
GCGGCGCCGC GGGGAACCGG CGTGCTGGTG GCCGCTGACG GACCCGAGCA CGGCGTCCGC
GCGAAGGCGC TCACCCACGT CGACGCGAAG TGGGCGTGGG TGCGCGACCT GGTCGGGCCC
GGGCACGCCG TCGTCCGCCT GTCCTTCGGG CGGCCCGGTG AGCGCCTCGA GCCGCCCGCG
GGTGCGGCGT TCGAGCCGTG GCTCGTCGAG CGCGCGACGT CGGACGCCGC GACGCTCCTC
GGCGTCGGGC TCGCGCCGGC CGACGTCGTC GCGAGCGCCG TCACCCGCTG GCCTGGCGCG
CTGCCTCCCC CGACGCCCGC CGCGCGGGCC GCACGCGAAC GCGTGCTCAC CGCCGCCTCG
GGCCTGCCCG GGGTGGGCGT GACCGGCGCG TGGGTCGCCG GGACCGGGCT CGCGGCGACT
GTCCCGCACG CGGCGAGCTG CGCCGTCGCC CTCGTGCCGG AAATCCCGAC CGAAGAAACG
ACGCAGAATC GTTAG
|
|---|
| Protein sequence | MADDGAPRGA VPGAGRGAGP GAGPGAERRA DAVVVGGGIG GLVAARELTR AGLTTLVLEA
SDAVGGPLRA VTIDGPGGAA LRLDAGAESF ATRTDAVAAL AAELGLATAD PAAGGAWAWA
GGRAFPLPAP ALLGIPGRPW SAAVRAALGA GGQVRAALDA ALPRRVGARE QTLAGLVRRR
MGRRVVDRLV GPVAGGVHAA DPRDLAVDAV APGLRAALRR TGSLAGAVRA LRSGAAPGAA
VRGIVGGMHL LPTALAAQAG EVRLRAPVTA IERADDGWEV VVAGGRVRTP RVVLATDAAT
AAALLAPHTR LDDGDVSAVA PDRAADIALV TLVLRTDELA AAPRGTGVLV AADGPEHGVR
AKALTHVDAK WAWVRDLVGP GHAVVRLSFG RPGERLEPPA GAAFEPWLVE RATSDAATLL
GVGLAPADVV ASAVTRWPGA LPPPTPAARA ARERVLTAAS GLPGVGVTGA WVAGTGLAAT
VPHAASCAVA LVPEIPTEET TQNR
|
|---|
| |