Gene Bcav_3534 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcav_3534 
Symbol 
ID7860798 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBeutenbergia cavernae DSM 12333 
KingdomBacteria 
Replicon accessionNC_012669 
Strand
Start bp3928837 
End bp3929421 
Gene Length585 bp 
Protein Length194 aa 
Translation table11 
GC content77% 
IMG OID643867637 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_002883538 
Protein GI229822012 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02983] RNA polymerase sigma-70 factor, sigma-E family 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.517598 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGGGGT CCGAGGGGGT GCCCGCAAGC GGGTCGGCGG ATGAGCCCGG GGTCGCGCCC 
GCGGCGATCG AGCCGCACGG AGGGCGCGAC GCCGAGTTCA CCGCGTTCGT CGAGCTCCAC
GGCGACGCGC TCGGCCGCAC GGCCTGGCTC CTGTGCGGCG ACGCGCACCG CGCCGAGGAG
CTCGTGCAGG AGACGCTCGT GCGGACGTAC GTGCACTGGC ACCGGGCGAG GGCCGGCGAG
CCGCTCGCCT ACGCGCGGCG CGTGCTCGCG AACCTCCGCA TCGACACCTG GCGGGCGCGG
CGGCGGGAGA CGCTGCGGGG ACCGGAGACG ATGCCGGAGC GAGCGTCCGA CGACGGCGGA
GCCGCCGTCG TCGAGGACCG CGCCGTTCTC GCGGCTGCCC TCGCCCGGCT GACCCCGCGC
CAGCGCCGCG CCGTCGTGCT GCGGTACTTC CTCGGGCTGC CGGAGGCGGA CGTGGCGCGC
GACCTGCGCG TCTCGGTCGG CACCGTGAAG TCGACGACGT CGCGGGCGCT GGCCGTGCTG
CGCGGGCACC TGGAACCCGA GCGCGAGGCG GGGAGGACGT CATGA
 
Protein sequence
MTGSEGVPAS GSADEPGVAP AAIEPHGGRD AEFTAFVELH GDALGRTAWL LCGDAHRAEE 
LVQETLVRTY VHWHRARAGE PLAYARRVLA NLRIDTWRAR RRETLRGPET MPERASDDGG
AAVVEDRAVL AAALARLTPR QRRAVVLRYF LGLPEADVAR DLRVSVGTVK STTSRALAVL
RGHLEPEREA GRTS