| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_3444 |
|---|
| Symbol | |
|---|
| ID | 7859218 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | - |
|---|
| Start bp | 3844173 |
|---|
| End bp | 3846041 |
|---|
| Gene Length | 1869 bp |
|---|
| Protein Length | 622 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 643867544 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002883448 |
|---|
| Protein GI | 229821922 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5434] Endopolygalacturonase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.623137 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACACGG CAGTCGACAG GCGTCACCTC CTCCGCGCGG CCGGCATCGC CGGCCTGGGC
GTCGCGGCGC TCGCGGCCGG CAGCGCGCCC GCGGGCGCCA CCCCCGACGA CGGCGCCACG
CCGGGCGACG CCGCCGCCGG GGCCACGCCC GCCGTCGACG TCGCCGGAGC GACGACACCG
CAGGACTTCG GCGCCGTCGG CGACGGCGTC GCTGACGACA CCGCCGCCAT CCAGCAGGCG
ATCGACGCCC AGGCGAGCAA GCTCAACAAG ATCGTGTACT TCCCGCCGGG CACGTACCGG
ACCACCGCCA CGCTCGTCGT CCCCGACACC GAGGGGGCCG GGGCAACGAA CTTCAACCGG
ATCGTGCTGA CCGGCGCGGG GACGATGGGC GTGCGCTCGT CGATCATCAA GGCGGACTTC
GACGGCACGG CGATCCTCCT GCGGGCGCCG CTCGCCGGGA TCCGGGGGCT GGCGTTCGTC
GCGCCTGCGA GCCTGCAGAA CACCGTCGCG CTGCACATCG CGCGCGACCC CGACGCCGTG
AGCCCGAACA CCGACGACGT CGACCCGACG ATCACCGAGT GCACGTTCGT CGAGTTCTAC
ACGGCGGTGA AGCACGTCGG TCGCGGCCTC GTGTTCACGA ACAACCTCGT CGCGGTCGGG
GACTACGGGC TCGACATCTC GTGGCCGACG GCGGGGGTCG CCGGCAGTGG CGTGCACCTC
CTCCCGTACG GGATGCGGAA GTGGCTCATC GAGGGCAACC ACTTCCACAG CATGGGGACG
GCCGTGATCA CCACGGGCGC GGACGCCCAC AACTTCCGCG GGGCGATCAT CGCGAACAAC
CTGCTGGACA TCGGGCGTCG CCTGTTCGCC GGCGGGATCG TGAACTCGAC GTTCTCCGGG
AACGTCGTCG AGAACGGCTC GAACGGGTCG ATCATCGCCG TGACGTCCGG CGGCACGAAC
CTGACGTTCA CGGGGAACGT CCTCGGGGGC GGCGAGCCGG GCGGCGGCGG CCGGCCGACG
CACGCCATCG AGTTCCGGCC GGAGGCGACG GCCCGCAACG TGACGATCAC GGGCAACTCG
TTCAACTGGG TGAGCGGGTC GCCGGTCTAC TTCGCGGCCG GCGCGTCGGC GGTCACCGTC
TCGGCCAACT CGTTCGACCA CTGGAACCTC GACGCCGAGG AGCGGTGGGC GGCGATCCGG
GTCAACGGCG ACGCGGCGGG CCTGTCGGTG ACGGGCAACG CGTTCGCCGC CAACACGGTG
GCTGGCGCGC CGCCGGTGCG GGTGATCGGT GCCGTGACCG GGTCGACGAT CGTCGGCAAC
GTCTTCGAGA ACACGGCGGG CGTGCTGTAC GCCGAGGCCC TGGGCGCCGA CAGCTACGTC
GAGCGCCGCA CCGCCGGTGC GAACGGGCAC GAGCTGACGG CCGCCGCGAA CGGCGCGCTC
GTCGTCCGCG CGACCGGCAC ACCGTCGGTG GGCGAGGACG CGTACGGCAG CTTCCTGGCG
GCGTCGGACG CCGCGACGGG CGCAGGACCT GGTGTGAAGG GCGGTGTGCG CGTGGTCCCG
GCGAACGACT CCGGGGCCGC CGCGACGGAG CTGCTGTGCT CGACGAACAG CTCGAACGGG
GTCACGTCCA TGCGCGTGGA CATCACCGGG CTCGTCCCCA GCGCCGACAA CGTGCGCGAC
GTGGGATCCG CGGAGAACCG GATCCGCACC GTGTTCGCCC ACCAGCTCCA GCTCGCGACG
GCGTCGGCCG GGCAGCTCCC GGAGCCCACG GCGGGCGCCG TCGTGCTCGT CGACGGTCCC
GGCGGCACGG CGCTCGCCGT CGCCGACGGC ACCACCTGGC GGCGACTGCC GCTCGGCGGC
CGGATCTAG
|
|---|
| Protein sequence | MDTAVDRRHL LRAAGIAGLG VAALAAGSAP AGATPDDGAT PGDAAAGATP AVDVAGATTP
QDFGAVGDGV ADDTAAIQQA IDAQASKLNK IVYFPPGTYR TTATLVVPDT EGAGATNFNR
IVLTGAGTMG VRSSIIKADF DGTAILLRAP LAGIRGLAFV APASLQNTVA LHIARDPDAV
SPNTDDVDPT ITECTFVEFY TAVKHVGRGL VFTNNLVAVG DYGLDISWPT AGVAGSGVHL
LPYGMRKWLI EGNHFHSMGT AVITTGADAH NFRGAIIANN LLDIGRRLFA GGIVNSTFSG
NVVENGSNGS IIAVTSGGTN LTFTGNVLGG GEPGGGGRPT HAIEFRPEAT ARNVTITGNS
FNWVSGSPVY FAAGASAVTV SANSFDHWNL DAEERWAAIR VNGDAAGLSV TGNAFAANTV
AGAPPVRVIG AVTGSTIVGN VFENTAGVLY AEALGADSYV ERRTAGANGH ELTAAANGAL
VVRATGTPSV GEDAYGSFLA ASDAATGAGP GVKGGVRVVP ANDSGAAATE LLCSTNSSNG
VTSMRVDITG LVPSADNVRD VGSAENRIRT VFAHQLQLAT ASAGQLPEPT AGAVVLVDGP
GGTALAVADG TTWRRLPLGG RI
|
|---|
| |