| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_3355 |
|---|
| Symbol | |
|---|
| ID | 7860321 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | - |
|---|
| Start bp | 3728748 |
|---|
| End bp | 3730301 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 643867455 |
|---|
| Product | Na+/solute symporter |
|---|
| Protein accession | YP_002883360 |
|---|
| Protein GI | 229821834 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0591] Na+/proline symporter |
|---|
| TIGRFAM ID | [TIGR00813] transporter, SSS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.947348 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGCGC TCGACTGGAT GGTGGTCGGG GGGTACTTCC TCCTGATGGT GGGGATCGGC
TGGTGGGCGA AGGCGCGCGT GCACGACTCA CGCGACTTCT TCACGGCCGG CGGCCGGATG
CCGTGGTGGC TGTCCGGCAT CTCGCACCAC ATGTCGGGCT ACAGCGCCGC CGTCTTCGTC
GGGTACGCCG CGATCGCCTA CACCGAGGGC TTCGTGCTCT ACATCTGGTG GGCGCTCGGG
ATCTCCGCCG CCATGGTGAT CGGCGCGTTC CTGTTCGTGC CGCGCTGGCC GCGGCTGCGT
CAGCGGCTCG GGATCATCTC GCCGCTGGAG TACCTCAAGA CCCGGTACGG GCTGCCCACG
CAGCAGCTGC TCGCGTGGAG CGGCACGCTG CTCAAGGTCT TCGACGTCGG CGCGAAGTGG
ACGGCGACGG CGCTGCTGCT CAACGTGTTC GCCGGCGTCC CGATCGCCGC GGGCGTCCTG
TTGACGGGCG GCGTCACGCT CATCTACTCG GCCATCGGAG GACTGTGGGC CGACGCGCTG
ACCGACCTCG GGCAGTTCCT GGTGCAGCTC GTGGCCGGGA TCGTCATGTT CGTCACGGTG
CTCGTCACGC TCGACGGCGT CCCGACCCTC TGGACGATGT GGGACCGCCT GCCGGAGGGG
AACTCCCAGC CGTTCAACGG TCAGTACACG CTGCTGTTCG TGCTCGTGTA CCTGCTCATC
AACACGCTCT CGTACAACGG CGGCACGTGG AACCTGGCGC AGCGGTTCAT CGCGTCGCCC
ACCGGCAGCA CCGCCCGCCG CGCCGCGCTG TTCTCCGCCT CCCTCTACCT CGTGTGGCCG
CTCGTCATGT TCCTGCCGAT GTGGGCGGCG CCGATCCTGC TGCCGGACCT GGAGGACCCG
CAGCAGTCGT ACGCGCTGCT CACGCAGGAG CTCCTCCCGG TCGGGCTCGT GGGCCTCGTG
CTCGCCGGCC TGTTCGCGCA CACGATGGCC ATGACCGGGT CCGACGCGAA CGCGATCAGC
TCCGTCGTGA CGCGCGACAT CATCCCGGCG ATCTGGCGCC GGGGCCGCGC GATGAACACC
CGGACGGAGC TCGCCGTCGG CCGCATCGCG GTGGCGGCGT TCATCGCGCT CAGCATGGTC
ATCGCGCTCA CCGCCGACAG CTTCGGCGGC GTCCTCGGCC TCATCATCCT GTGGTTCGGC
GGGCTGGTCG GACCGATCGC CGTCCCGATG CTGCTCGGCC TGCTGCCGGC GTTCAAGCGG
TGCGGGCCGG TCGCCGCGAT CTCCTCGTGG GCCGTCGGGC TCGCCGTCTT CGCCCTGACG
CGCTACGTGT TCGACGGCGC CATCGCCTCG CTCGCGCCGG ACCAGGTCAC GGCCGTGCAG
GTCGGCGGGC CGGTCGTGTG CTCGATCGTC ACGTTCCTCG TGATCGGCCT CGTGGCACCG
TGGCGCAACG CCGCGTCCGA CGAGCTCGTG GACTCGATCG CCGTCGAGAT CGACGCGTCG
GTGGTGTTCG GGGACGAGCG CACCGGCGAC GAGCGGGCGG CCACCCGTGC GTGA
|
|---|
| Protein sequence | MGALDWMVVG GYFLLMVGIG WWAKARVHDS RDFFTAGGRM PWWLSGISHH MSGYSAAVFV
GYAAIAYTEG FVLYIWWALG ISAAMVIGAF LFVPRWPRLR QRLGIISPLE YLKTRYGLPT
QQLLAWSGTL LKVFDVGAKW TATALLLNVF AGVPIAAGVL LTGGVTLIYS AIGGLWADAL
TDLGQFLVQL VAGIVMFVTV LVTLDGVPTL WTMWDRLPEG NSQPFNGQYT LLFVLVYLLI
NTLSYNGGTW NLAQRFIASP TGSTARRAAL FSASLYLVWP LVMFLPMWAA PILLPDLEDP
QQSYALLTQE LLPVGLVGLV LAGLFAHTMA MTGSDANAIS SVVTRDIIPA IWRRGRAMNT
RTELAVGRIA VAAFIALSMV IALTADSFGG VLGLIILWFG GLVGPIAVPM LLGLLPAFKR
CGPVAAISSW AVGLAVFALT RYVFDGAIAS LAPDQVTAVQ VGGPVVCSIV TFLVIGLVAP
WRNAASDELV DSIAVEIDAS VVFGDERTGD ERAATRA
|
|---|
| |