Gene Bcav_3304 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcav_3304 
Symbol 
ID7861776 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBeutenbergia cavernae DSM 12333 
KingdomBacteria 
Replicon accessionNC_012669 
Strand
Start bp3661312 
End bp3662637 
Gene Length1326 bp 
Protein Length441 aa 
Translation table11 
GC content71% 
IMG OID643867404 
Productextracellular solute-binding protein family 1 
Protein accessionYP_002883309 
Protein GI229821783 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.00753481 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGGCGGCA TCTCGAGGCG TAGGGCGCTC CAGCTGGGCC TCGGCGCGAG CGCCGGAGCG 
GCGCTCGCCG CCTGTGCGCC GGCGACGGCG AACCCCAACA CCCAGCCGGT GATCCCGCGG
GCGGACGGAC CGGTCCGTCT GACGTACTGG GCGTGGCTCA AGGACCTGCA GAACGTGTGC
GACATCTGGA ACGCCGCGAA CCCGGACGTG CAGGTCGACG CGGTCTGGAT CCAGGGCGGC
AACGGCGGCG GCTACCAGAA GATGTTCTCG GCGCTCGCGG CCGGCGGCGG ACCGGACATC
GGCCAGGTCG AGCTGCGCCA GGTTCCGGCG TTCATGCTGG TCAACGGCCT GGTCGACGTC
GCTCGGTACG GGATGAACGA CGTCACCGAC CGCTACGACG AGGCGCTCGT CAGCCAGGTC
ACGTTCAACG ACGGCATCTT CGGCGTCCCG CAGGACTCCG GCCCGTGCGC GTTCTACTAC
CGCACCGACC TGCTCGAGGG CATCGGCGCG CAGGCCCCGA CCACCTGGGA CGAGTGGGCC
GAGCTCGCCG CAGAGGTCCG GTCGGCTGAC GCCTACCTCG AGTCGTTCAA CGTCGGCGAC
ACGTCAGGCT TCTGCTCCTT CGCCACCCAG GCCGGTGCGA ACTGGTGGCA GATCGACGGC
GACGCCTGGG TCGTCGACAT GGCCGACGAC GTCACGCTGG AGGTCGCCGA CTTCTTCGAT
CGCGCCGTCG ACCAGGACCT GCTGGACACC GGCTTCGGCG CCTTCTCGCC CGGCTGGTAC
GCCGCCGTCG CGAACGACGG CATCTACGCG GTGACGAGCG CGTCGTGGGG CGACGCGCTC
ATCCAGAGCG CCGCGAGCAC CGAGGGGCTG TGGCAGGTCG CGCCGATGCA GACCTGGCCC
CAGGGCTACG GCTCGACCTA CCTCGGCGGG TCCACGGCCG CCGTCATGGC CAACTCGCGA
CACCCCGCGG AGGCGCTCGA CTTCTGCGTG TGGATGACGA CGTCGGAGGA GGGGGTCGAC
GCGATGATCG AGCACTGCGG GATCGGCTGG TCGCCGGCGC GCGACTTCAT CGGCACGCCG
CGGATGGGGC CGTCGGAGTT CTTCGGCGGC CAGAGCTACA ACGAGGAGAT CTTCGTGCCG
GCGGCGCAGG AGCAGAACAC CGACTGGACG TGGGCGCCCC CGACGCAACG CATCTTCAAC
GTCCTCGCGG ACGGGTTCCG GCGCAAGCTG ACCGCCGGCG ACACGTTCGT CCAGGCCGTG
CGCGACGCCC AGGACGCCAC GATCCGCATC CTGGCCGACT CCGGGCTCAA CGTGAGGTCG
GCGTGA
 
Protein sequence
MGGISRRRAL QLGLGASAGA ALAACAPATA NPNTQPVIPR ADGPVRLTYW AWLKDLQNVC 
DIWNAANPDV QVDAVWIQGG NGGGYQKMFS ALAAGGGPDI GQVELRQVPA FMLVNGLVDV
ARYGMNDVTD RYDEALVSQV TFNDGIFGVP QDSGPCAFYY RTDLLEGIGA QAPTTWDEWA
ELAAEVRSAD AYLESFNVGD TSGFCSFATQ AGANWWQIDG DAWVVDMADD VTLEVADFFD
RAVDQDLLDT GFGAFSPGWY AAVANDGIYA VTSASWGDAL IQSAASTEGL WQVAPMQTWP
QGYGSTYLGG STAAVMANSR HPAEALDFCV WMTTSEEGVD AMIEHCGIGW SPARDFIGTP
RMGPSEFFGG QSYNEEIFVP AAQEQNTDWT WAPPTQRIFN VLADGFRRKL TAGDTFVQAV
RDAQDATIRI LADSGLNVRS A