Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcav_3235 |
Symbol | |
ID | 7861591 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Beutenbergia cavernae DSM 12333 |
Kingdom | Bacteria |
Replicon accession | NC_012669 |
Strand | - |
Start bp | 3592957 |
End bp | 3594759 |
Gene Length | 1803 bp |
Protein Length | 600 aa |
Translation table | 11 |
GC content | 78% |
IMG OID | 643867336 |
Product | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylic acid synthase/2-oxoglutarate decarboxylase |
Protein accession | YP_002883241 |
Protein GI | 229821715 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1165] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase |
TIGRFAM ID | [TIGR00173] 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.49226 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.038874 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGAGCGCCC CGGCGGGAGG CGAGAACGCG TCGACGCGCA CGGCGCGGGA GCTCGTCGAG GCGCTCGTCG AGCACGGCGT GCGGCACGCC GTCCTGGCGC CGGGCTCGCG CAGCGCGCCG CTCGCGTACG CCCTGCTGGT CGCGGAACGC GCCGGGCGCC TCGCGCTGCA CGTGCGCATC GACGAGCGCA GCGCCGGCTT CGTCGCGCTC GGGATCGCGA AGGCGTCGGG GAAGCCGGCG GTGGTGGTGA CGACGTCGGG CACGGCGGTC GCGAACCTGC ACCCAGCGGT GCTCGAGGCC GGGCACGCGC GCGTGCCGCT GCTCGTGCTC TCGGCGGACC GGCCCCTCGA GCTGCGCGGG ACCGGCGCCA ACCAGACCAC CGACCAGGTC GACCTGTTCG GGGTCGGCAC GGACGTCTCG CGGCCGCGGT GGAGCGTCGA CATGCCGGCT CCGGGTGGGT CCGAGCCGGC CGAGCCCGGC GAGCCCGGGC ACGAGCCGGA CGTGCGGGAC GTCGTCGCGC GGGCGGTGGC GGCGGCTCGC GGCGTTCCCG GCGCGGCGTC CGCGCGGGAG CTCGACGGCG TTCCGGGGGC GGTGCACGTC AACGTCGCCT TCCGGGAGCC GCTCGTGCCG GACCTGCCGC TGGCGGGCGG GGAGCGGCCG GCCCCCGTGC CGACGGAGCC TTCCGCGTCG GTGCCGGTGT CGGCCGATGC GTCGGCGTCG GCGCACTTCT CGGCGAGGGC GGTGCCCGGT GCCGGGTCCG GCACGATCGT GATCGCTGGC GACGCCGCCG GCCCTGCCGC CCGCCGGCTG GCCGAGGCCG CGGGCCTGCC GCTGCTCGCG GAACCGTCGT CCGGGGCGCG CGGCGGCCCG AACGCCGTCG TCAGCCCGGC ACAGCTCCTC GGCGTACCGG GACTCGGTGA CGCCGTCCGG CGCGTCGTCG TCCTCGGCCG GCCGACGCTC TCCCGGCCGG TGTCGCGGCT GCTGGGGCGG GCGGACGTCG AGGTCGTCGT GGCCGACCCC GCGGGGATGC CGTGGCTCGC GCCACCCCGG GCGCTCCACG TGCCGGCTGA CGCTCTCGCG CTCGAGCCCG GCGACCCGGC GTGGCTGGCG CGGTGGGGTG CCGCGTCCGA CGCCGCCGGT CTCGTGCTCG ACGACGTCGC CGCTCGCGCC GCCCTCACCG GGCCGGGGGT GGCCCGCCTC GTGGCCGCCG CTGCCGCGCG GTCCGGCGAC GTGCTGCTCG CCGGGTCGTC GATGGCCGTG CGTCACCTCG ACACGGCCGC CGCGCCGTCG GACGCCCAGA TCCTCGCCAA CCGCGGGCTC GCGGGGATCG ACGGGACGGT GTCGACCGCC GTCGGCCTCG CGATCGCAAC ACGCCCCGGT ACGACGGTGC GTGCGCTGCT CGGCGACCTC ACCCTGCTGC ACGACGCCGG CGGACTCGCC CGCGGGCCGC TCGAGCGGGA GGTCGCGGTG CAGCTCGTGG TCCTGCACGA CGACGGCGGC GCGATCTTCG CGACCCTCGA GCAGGGTGAG CAGCGCCTCG CGGGGGAGTT CGAGCGGGTC TTCGGCACGC CGCAGGGCGT CGACCTGGCG GCGCTCGCGG CCGCGTACGG CGTCGAGCAC GTGCGTGTGG AGGACAGGCG TGCGCTGGAG TCCGCGCTGC GTGCCCCGGC GCCCGGGCGG AGCCTCGTCG AGGTGCCCGT GGCGCGGGAT CAGGTGCGCG CCGACGTCCA GGAGCTCGAC GCGCGGATCG TCGCGGCGGC GACAGCTGCC CTGTCGCGCA GTGGGCGCGC TCCACAGCCC TGA
|
Protein sequence | MSAPAGGENA STRTARELVE ALVEHGVRHA VLAPGSRSAP LAYALLVAER AGRLALHVRI DERSAGFVAL GIAKASGKPA VVVTTSGTAV ANLHPAVLEA GHARVPLLVL SADRPLELRG TGANQTTDQV DLFGVGTDVS RPRWSVDMPA PGGSEPAEPG EPGHEPDVRD VVARAVAAAR GVPGAASARE LDGVPGAVHV NVAFREPLVP DLPLAGGERP APVPTEPSAS VPVSADASAS AHFSARAVPG AGSGTIVIAG DAAGPAARRL AEAAGLPLLA EPSSGARGGP NAVVSPAQLL GVPGLGDAVR RVVVLGRPTL SRPVSRLLGR ADVEVVVADP AGMPWLAPPR ALHVPADALA LEPGDPAWLA RWGAASDAAG LVLDDVAARA ALTGPGVARL VAAAAARSGD VLLAGSSMAV RHLDTAAAPS DAQILANRGL AGIDGTVSTA VGLAIATRPG TTVRALLGDL TLLHDAGGLA RGPLEREVAV QLVVLHDDGG AIFATLEQGE QRLAGEFERV FGTPQGVDLA ALAAAYGVEH VRVEDRRALE SALRAPAPGR SLVEVPVARD QVRADVQELD ARIVAAATAA LSRSGRAPQP
|
| |