| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_3218 |
|---|
| Symbol | |
|---|
| ID | 7857975 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | - |
|---|
| Start bp | 3574193 |
|---|
| End bp | 3576121 |
|---|
| Gene Length | 1929 bp |
|---|
| Protein Length | 642 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 643867319 |
|---|
| Product | NADH dehydrogenase subunit L |
|---|
| Protein accession | YP_002883224 |
|---|
| Protein GI | 229821698 |
|---|
| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1009] NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit |
|---|
| TIGRFAM ID | [TIGR01974] proton-translocating NADH-quinone oxidoreductase, chain L |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.136607 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0162367 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCTT CTGCCTGGCT GCTCGTCGCC CTGCCGCTCG CGTCGGCGGG CGTGCTCCTG
CTGCTCGGCC GCGCCGCCGA CCGGTGGGGC CACTGGCTCG GCCTCGCCGC CTCCGCTGCC
GCCGCCGTCG TCGGGGTGCT CGTGGCGCTC GAGGTCGCCG GCCTGCCCGC CGACGAGCGC
GTCCAGGACG TCCACCTGTT CTCGTGGATC CCGGCGGGTG CCCTCGACGT CGACGCGGGC
CTGCGGATCG ACCCGCTGTC CGTGACGTTC GTGCTGCTCG TGACGGTCGT CGGCACCCTG
ATCCACGTCT ACTCGGTGGC GTACATGGCG CACGACGCCG CTCGCCGCCG CTTCTTCGCG
TATCTCAACC TGTTCGTCGC GGCCATGCTG CTGCTGGTGC TCGCCGACTC GTTCGCGCTG
CTGTTCGTCG GCTGGGAGGG CGTCGGTCTC GCGTCGTACC TGCTCATCGG CTTCTGGAAC
CACAACACCG AGTACGCGGT CGCGGCGAAG AAGGCGTTCG TCATGAACCG CGTGGGCGAC
GTCGGACTGC TCATCGCGAT GATGCTGATG TTCCACCACG TGGGCGGGGT GGGCTTCTCC
GAGGTGCTCG ACGCCGCTCC GGGTCTCTCC GAGGGTGCGC TGACGGCGAT GGGCCTCATG
CTGCTCCTCG CCGCGTGCGG CAAGTCCGCG CAGTTCCCGT TGCAGGCGTG GCTCGGCGAC
GCGATGGCAG GCCCGACGCC GGTCTCGGCG CTCATCCACG CCGCGACGAT GGTCACGGCG
GGTGTGTACC TCGTCGTACG GTCCGGTCCG ATCTTCGAGG CGTCGCCGAC GGCGCAGCTC
GTCGTCGTCA TCGTCGGCGC GATCACGCTG CTGTTCGGGG CGATCGTCGG TTGCGCGAAG
GACGACATCA AGAAGGCTCT CGCGGCGTCG ACCATGTCGC AGATCGGGTA CATGATGCTG
GCCGCCGGCC TCGGGCCGAT CGGGTACGCG TTCGCGATCT TCCACCTGGT GACGCACGGC
TTCTTCAAGG CCGGGCTGTT CCTCGGTGCC GGCTCCGTCA TGCACGGCAT GGACGACGAC
ACCGACATGC GCCGGTACGG GGCGCTGCGC AAGGTCATGG TCGTCACCTG GGCCACGTTC
GGCCTCGGCT GGCTCGCGAT CCTCGGCGTC CCCCCGTTCT CGGGGTTCTG GAGCAAGGAC
AAGATCATCG AGTCCGCGTT CGTGGGCGAC GGCTGGCAGC CGTGGGTGTT CGGCACCGTC
ACCCTGCTCG GCGCCGGGAT CACCGCGTTC TACATGTCGC GCGTCTTCTT CATGACGTTC
CACGGGAAGG CGCGCTGGAC CGACCAGCGC GAGGTCGTCG CCGCATCCGC GAACCCGGGC
ACCGCCCTTC CGCTGCGGCA CCCGCACGAG TCGCCGTGGC TGATGACGGC GCCGATGGTG
GTGCTCGCGA TCGGTTCCGC CGGCCTGGGC TGGGTGCTGT CGGCCGGGGG CCGGTTCAGC
ACGTGGCTCG AGCCGGTGAC CGGGCACGTC GAGCACCACG ACCCCGTGCT GCCCGTGCCG
GCGATCATGA CGGCCACGCT CGTGCTGGTC GCCGCCGGAG CCCTGCTGGC CTGGCGGCAG
TACGGCGCCG CGCCGGTGCC GCAGCTCGCG CCCACCGGAT CCGTGCTCAC GCGGGCGGCT
CGGCGCGACC TGTACCAGGA CGAGGTCAAC GAAGGGATCT TCATGCGGCC GGGCCAGTAC
CTCACCCGCT CGCTCGTGTA CGCGGACACC GCCGTCGTCG ACGGGGCCGT GGCCTCGCTC
GCGTCCGGTA CCGTCGGCGC GGGCGAGCGC TGGCGTCGCT GGCAGAACGG CTACGTCCGC
TCCTACGCCG CGCTGATCCT GGCCGGAACC GTCATCGCCG CCGCGGCGCT CCTCGCGGCG
CGGGTCTGA
|
|---|
| Protein sequence | MIASAWLLVA LPLASAGVLL LLGRAADRWG HWLGLAASAA AAVVGVLVAL EVAGLPADER
VQDVHLFSWI PAGALDVDAG LRIDPLSVTF VLLVTVVGTL IHVYSVAYMA HDAARRRFFA
YLNLFVAAML LLVLADSFAL LFVGWEGVGL ASYLLIGFWN HNTEYAVAAK KAFVMNRVGD
VGLLIAMMLM FHHVGGVGFS EVLDAAPGLS EGALTAMGLM LLLAACGKSA QFPLQAWLGD
AMAGPTPVSA LIHAATMVTA GVYLVVRSGP IFEASPTAQL VVVIVGAITL LFGAIVGCAK
DDIKKALAAS TMSQIGYMML AAGLGPIGYA FAIFHLVTHG FFKAGLFLGA GSVMHGMDDD
TDMRRYGALR KVMVVTWATF GLGWLAILGV PPFSGFWSKD KIIESAFVGD GWQPWVFGTV
TLLGAGITAF YMSRVFFMTF HGKARWTDQR EVVAASANPG TALPLRHPHE SPWLMTAPMV
VLAIGSAGLG WVLSAGGRFS TWLEPVTGHV EHHDPVLPVP AIMTATLVLV AAGALLAWRQ
YGAAPVPQLA PTGSVLTRAA RRDLYQDEVN EGIFMRPGQY LTRSLVYADT AVVDGAVASL
ASGTVGAGER WRRWQNGYVR SYAALILAGT VIAAAALLAA RV
|
|---|
| |