Gene Bcav_3025 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcav_3025 
Symbol 
ID7860136 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBeutenbergia cavernae DSM 12333 
KingdomBacteria 
Replicon accessionNC_012669 
Strand
Start bp3373180 
End bp3374076 
Gene Length897 bp 
Protein Length298 aa 
Translation table11 
GC content73% 
IMG OID643867122 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_002883031 
Protein GI229821505 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.967361 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.00254497 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGAGTGCGC GCTGCCAGAT CCTCGCGGAG CTCTACGACG AGGCGCGGCC GCGGCTGGTC 
GGCGTGGCCT ACGCGATCCT CGGGAGCTAC GCCGAGGCCG AAGACATCGT CTCGGAGTGC
TGGATGCGGC TCGTGGAGGC GGACGCGGGT CAGCCGGTGC TGGACGTCGA GGGGTGGTCG
ATCGTCGCGG TGTCGCGCGC GGCGATCGAC GTCCTGCGGT CCGCTCACCA TCGCCGCGAG
TCGTATCCCG GTTCCTGGTT GCCGGAGCCG GTGGTCGATG CGGCGGACCC GGACCCTGCG
GACCGGGTGA CGCTCGACGA TCGCCTCCGC TACGCGCTCC TCGTCGTCCT CGAGTCGCTC
TCGCCGGCCG AGCGGACGGC GTGGGTGCTG CACGACCTGT TCGAGCTGAC GTTCGCGGAC
GTCGCTCGGG TCGTCGGTCG ATCGCCGGCG GCCGTGCGGC AGCTCGCAGC CCGCGCACGC
CGGCACGTGG CCGAGCGTGC TCCGCGGTTC GACATCGCCC CGGCGGAGCA CCGTGCGGTG
GTGGAGCGGT TCCTCGCGGC CGCGACGGGC GGCAGCCTCG CCGATCTCGT CAGATACCTC
GACCCCGACG TCGTGCTGAC CAGTGACGGC GGCGGGGAGG TCAGCGCGGT CCGGCGCCCC
GTCGTCGGCG CGGATCGGGT CGCCCGGTTC CTGGTGGGGA TCGCCGGGCG GGTCCGACCC
GACGAACGCG TCGTCGTCGT CTCGGTCAAC GGAGCGCCCG GTCTGGCCGT GTTCCGCGCC
GCCGCGCTCA CGGACGTCAT CGCGCTCACG GTCTCCGGTG GGCTCGTCTC GCGGGTCGAC
TTCGTACGAG CGCCGGCGAA GCTCGAGCGC GCCTGGCGCA GCGGAGCGGC ATCATGA
 
Protein sequence
MSARCQILAE LYDEARPRLV GVAYAILGSY AEAEDIVSEC WMRLVEADAG QPVLDVEGWS 
IVAVSRAAID VLRSAHHRRE SYPGSWLPEP VVDAADPDPA DRVTLDDRLR YALLVVLESL
SPAERTAWVL HDLFELTFAD VARVVGRSPA AVRQLAARAR RHVAERAPRF DIAPAEHRAV
VERFLAAATG GSLADLVRYL DPDVVLTSDG GGEVSAVRRP VVGADRVARF LVGIAGRVRP
DERVVVVSVN GAPGLAVFRA AALTDVIALT VSGGLVSRVD FVRAPAKLER AWRSGAAS