| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_3007 |
|---|
| Symbol | |
|---|
| ID | 7860118 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | - |
|---|
| Start bp | 3355145 |
|---|
| End bp | 3356362 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643867105 |
|---|
| Product | isocitrate dehydrogenase |
|---|
| Protein accession | YP_002883014 |
|---|
| Protein GI | 229821488 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0538] Isocitrate dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00127] isocitrate dehydrogenase, NADP-dependent, eukaryotic type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.375346 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.241731 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAAGA TCAAGGTCGC GGGACCGGTC GTCGAGCTCG ACGGCGACGA GATGACGCGG
ATCATCTGGC AGTTCATCAA GGACCGCCTG ATCCACCCGT ACCTCGACGT CGACCTGCGC
TACTACGACC TGTCGATCGA GAGCCGGGAC GCGACGGACG ACCAGATCAC CATCGACGCG
GCGAACGCCA TCAAGGAGCA CCACGTCGGC GTCAAGTGCG CCACGATCAC GCCGGACGAG
GCGCGCGTCG AGGAGTTCGG CCTCAAGAAG ATGTGGCGCT CCCCGAACGG CACGATCCGC
AACATCCTGG GCGGCGTCGT CTTCCGCGAG CCGATCATCA TCTCGAACGT GCCGCGGCTG
GTGCCGGGCT GGACGAAGCC GATCATCATC GGCCGTCACG CCCACGGCGA CCAGTACAAG
GCGACGGACT TCCGCGTGCC CGGTGCCGGC GAGCTGACCG TCACGTTCAC GCCGGCCGAC
GGCTCGGAGC CGATCCAGCA CGTCATCGCC GAGTACGGAG CCGACGGCGG CGTCGCGATG
GGCATGTACA ACTACGACGA CTCGATCCGG GACTTCGCCC GGGCGTCGTT CTCCTACGGC
CTGCAGCGCA GCTACCCCGT GTACCTGTCG ACGAAGAACA CGATCCTCAA GGCGTACGAC
GGCCGCTTCA AGGACCTGTT CGCCGACGTG TTCGAGACCG AGTTCAAGGC GGACTTCGAC
GCCGCGGGCC TCACCTACGA GCACCGCCTC ATCGACGACA TGGTCGCCTC GGCCATGAAG
TGGGAGGGCG GCTACGTCTG GGCCTGCAAG AACTATGACG GCGACGTCCA GTCGGACACC
GTGGCGCAGG GCTTCGGCTC GCTCGGCCTC ATGACCTCCG TGCTCATGAC GCCGGACGGC
CAGACGGTCG AGGCCGAGGC CGCGCACGGC ACCGTCACGC GCCACTACCG GCAGCACCAG
GCCGGCAAGC CGACGTCGAC CAACCCGATC GCGTCGATCT TCGCGTGGAC GGGCGGCCTC
AAGCACCGCG GCAAGCTGGA CGGCACCCCC GAGGTGACCG GGTTCGCCGA GGCGCTCGAG
GACGTCGTCG TGAAGTCCGT CGAGGCCGGT GCCATGACGA AGGACCTCGC GCTGCTCGTC
GGCCCGGACC AGGCGTGGCA GACGACCGAG GAGTTCCTCG CCACGCTCGA CGAGAACCTC
GCCGCGCGCC TCGCCTGA
|
|---|
| Protein sequence | MAKIKVAGPV VELDGDEMTR IIWQFIKDRL IHPYLDVDLR YYDLSIESRD ATDDQITIDA
ANAIKEHHVG VKCATITPDE ARVEEFGLKK MWRSPNGTIR NILGGVVFRE PIIISNVPRL
VPGWTKPIII GRHAHGDQYK ATDFRVPGAG ELTVTFTPAD GSEPIQHVIA EYGADGGVAM
GMYNYDDSIR DFARASFSYG LQRSYPVYLS TKNTILKAYD GRFKDLFADV FETEFKADFD
AAGLTYEHRL IDDMVASAMK WEGGYVWACK NYDGDVQSDT VAQGFGSLGL MTSVLMTPDG
QTVEAEAAHG TVTRHYRQHQ AGKPTSTNPI ASIFAWTGGL KHRGKLDGTP EVTGFAEALE
DVVVKSVEAG AMTKDLALLV GPDQAWQTTE EFLATLDENL AARLA
|
|---|
| |