| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_2876 |
|---|
| Symbol | |
|---|
| ID | 7860407 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | - |
|---|
| Start bp | 3210315 |
|---|
| End bp | 3211670 |
|---|
| Gene Length | 1356 bp |
|---|
| Protein Length | 451 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 643866973 |
|---|
| Product | extracellular solute-binding protein family 1 |
|---|
| Protein accession | YP_002882883 |
|---|
| Protein GI | 229821357 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.00736508 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCCACG GCACCGCCGA GCGAGCCCCG GATCCCGGGG CACGCGGACC CAGCCGACGA
ACGATGATGC AAGGCACGCT GGGGGCGGGG GCACTGGTCG CGGCAGGCAG TCTGTCGAGC
TGCGCCGGAA GCATCGCAGG GGCAGCGACA TCGGGAACCC TGGTCCGGAT CTGGGACCTG
TTGGGTGGCT CCGACGGCCA GATCATGGGG GAGATCGTCG ACGAGGTCCG CGTGGAGCTG
CCCGACATCT CCATCGATCG CACGACCCTG GCCTGGGGAG CGCCGTACTA CACGAAGCTC
GCCATGGCCT CGACCGGGGG GCGGGCTCCC GAGGCCGCCG TCATGCACCT GTCCCGTCTC
ATCGGGTACG CGCCGGGTGG GCTGCTCGAG CCGTTCGACA TGGACATGCT CGAGCAGGTG
GGGATCCGCG AGTCCGACAT CCCCGCCGCA CTCTTCGAAC GGTGCCTGTT CCAGGACGAG
ATGTACGCGC TGCCCCTGGA CACCCACCCG TTCATCACGT TCTACAACCC CGCGATCGCT
GAGCCCGCCG GCCTGCTCAA CCCGGACGGC ACGCTCATCG AGATCACGAG CCCGGACGAG
TTCCTCGACG CCGGGCGTGC GATGGCCGAC GTCACGGGTG CCCAGGGCAT CGCCTACGGG
TACCTCAGCG ACCCCGCCCA GGCGTGGCGC CTCTTCTGGG GTCTGTACGG GCAGTCCGGG
GCGGAGTACG ACTTCACGCC CGGCCAGGAT GTCGGGTTCG ACGACGGCAC GGCGGTCGAG
CTCCTCGAGT TCATGCAGTC GATGCTCGAC GGCACCGTCG CGGCGCCGAA CAGCGACTAC
GGGAGCGCGA TCGCGAACTT CACCACCGAG CAGGCCGGAC TCATCCTCTC CGGCGTGTGG
GAGAAGACGA GCCTCCAGGG CGCGTTCCCG GACCTCGGTG GCTCCCCGGT GCCGGTCATG
TTCGGCACCC CCGCCGCATT CGGCGACTCG CACAGCTACG TGCTCCCGCG CCAGCTGACG
CCGAACCCGG CGCGGCGCGA GGCCACGTAC GAGGTCCTCG GGGCGATCCT CAAGCAAGGT
CTGACGTGGG CCGGGGCCGG GCACATCCCA TCCCTCATCC CGGTGGTGGA GTCGCCGGAG
TACCAGGACC TCGTGCCGCA GAGCAACTAC GCGCAGGCCG CGGAGTCGAT CTTCCTCGAC
CCGCCCGTCT GGTTCGCGGG GTCCGGCAGC GACTTCCAGA ACCGGATGTG CCAGGCGATG
CAGACGGCGC TCCAGGGGCT GGGAAGCGCC CGCGACTCCG TCGACACCAT GATCCGCGAG
ATGAACACGT TCCTCGCGAC GCCGGCACCG GCGTAG
|
|---|
| Protein sequence | MTHGTAERAP DPGARGPSRR TMMQGTLGAG ALVAAGSLSS CAGSIAGAAT SGTLVRIWDL
LGGSDGQIMG EIVDEVRVEL PDISIDRTTL AWGAPYYTKL AMASTGGRAP EAAVMHLSRL
IGYAPGGLLE PFDMDMLEQV GIRESDIPAA LFERCLFQDE MYALPLDTHP FITFYNPAIA
EPAGLLNPDG TLIEITSPDE FLDAGRAMAD VTGAQGIAYG YLSDPAQAWR LFWGLYGQSG
AEYDFTPGQD VGFDDGTAVE LLEFMQSMLD GTVAAPNSDY GSAIANFTTE QAGLILSGVW
EKTSLQGAFP DLGGSPVPVM FGTPAAFGDS HSYVLPRQLT PNPARREATY EVLGAILKQG
LTWAGAGHIP SLIPVVESPE YQDLVPQSNY AQAAESIFLD PPVWFAGSGS DFQNRMCQAM
QTALQGLGSA RDSVDTMIRE MNTFLATPAP A
|
|---|
| |