| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_2816 |
|---|
| Symbol | |
|---|
| ID | 7861224 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | + |
|---|
| Start bp | 3141364 |
|---|
| End bp | 3143544 |
|---|
| Gene Length | 2181 bp |
|---|
| Protein Length | 726 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 643866913 |
|---|
| Product | glycoside hydrolase clan GH-D |
|---|
| Protein accession | YP_002882823 |
|---|
| Protein GI | 229821297 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3345] Alpha-galactosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.964152 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCCCGCG TCGTGTCCCA CCCCGCCCCG TCCGACGTTC CCGACGCCGT CCAGCTCAGC
GCAGGCGGCA CCGGCGTCGT CCTCGACCTC GCCGGAGGCC GGCTGCCGCG GGTGCTGCAC
TGGGGCCGCG ACGTCGGCCG GCTCCCCCCC ACGGAGATCG ACGACCTGCG CCGCGCGAGC
GTCCCGCCCC AGGTCTCCGG CTGGGTCGAC GTCGACGTCC CGCTCGGGCT GCTGCCCGAG
CAGAGCGCCG GCTGGCTCGG CACCCCCGGA CTCACCGGTC ACCGCGCGGG CCGCGACTTC
TCGACGGCGT TCGTCACCAC CGCCGTCGAC GTCACCGAGC CCGCGGACGA CCCCACGATC
GCCCACCGCG TCCGCGTGAG CGCCCGGGAC GCCGTCGCCG ATCTCGACCT CGAGCTCGAC
CTCGAGCTGA CCCGGTCGGG CGTGCTGCGC CTCCGTGCTC GGGTGACGAA CACCGGCGAC
GACGTCTTCG ACCTCGCCAC GCTCGACCTC GCGCTGCCGG TGCCGACCGA GGCGGCGGAG
CTGCTCGACC TCACAGGCCG GCACCTGCGG GAACGCTCGA TGCAGCGCGG CCCGTTCACG
CTCGGGACGC ACCTGCGGGA GTCGCGGCGC GCCGCCGGCC ACGACGCCAG CCTCGTGCTG
GCCGCCGGCG AGCCGGGCTT CGGGTGGCGG CACGGCGATG TGTGGGGCGT GCACGTCGCG
TGGTCGGGCA ACACCCGCAC CTACGCGGAG CGCACGAACC ACGGCGAGTC GTTCCTCGCC
GGCGGCGAGC TCCTCCTCGC GGGCGAGGTG CGGCTGCACC GCGGCGAGCG GTACGAGACA
CCGTGGCTGT ACGCCTCACG CGGCACCGGC CTCGACGACC TGGCGGCGCG CTTCCACGAC
TTCCTGCGCG CCCGGCCCGA GCACCCCCGC TCGCCGCGGC CGGTCACGCT CAACGTCTGG
GAGGCGGTCT ACTTCGACCA CGACCTGCCC CGGCTCCTCG AGCTCGCCCG GATCGCCGCC
GACGTGGGCG TCGAGCGGTA CGTGCTCGAC GACGGCTGGT TCCGCCACCG CCGCAACGAC
TCCGCCGGCC TGGGCGACTG GTACGTCGAC GAGGGCGTGT GGCCGGACGG CCTCGCGCCG
ATCGTCGACG CCGTGCACGA GCTGGGGATG CAGTTCGGCC TGTGGTTCGA GCCCGAGATG
ATCAACCCCG ACTCGGACCT CGCCCGCGCC CACCCCGAGT GGATCATGGC TCCGGGCGAC
CGCCTGCCGG TGCCGGCGCG GCGGCAGCAG GTCCTCAACC TCTCGATCCC CGAGGCGTAC
GAGCACGTCC GGTCGAGGAT GCTCGCGATC CTCGACGAGT ACCGGATCGA CTACATCAAG
TGGGACCACA ACCGCCCGCT CGTCGAAGCG GCGACCCGCG CCACCGGGCA GCCAGCCGTG
CACGCCCAGA CGCTCGCCAC GTACCGGCTC ATCGACGAGC TCAAGGCGGC CCACCCCGGC
CTGGAGATCG AGTCGTGCTC CGGCGGCGGC GGGCGGGCCG ACCTCGGGAT CCTCGCGCGC
ACCGACCGGA TCTGGGCGTC CGACTGCATC GATCCGCTCG AGCGGCAGCA GATCGAGGCG
GGAACGTCCC TGCTCCTCCC GCCCGAGCTC GTGGGCTCGC ACGTCGCCTC CCCGGTCAGC
CACACGACCG GCCGGTCGCA CTCCCTCGAC TTCCGCGCCG GGACGGCGTT CTTCTCCCAC
CTCGGCATCG AGTGGGACGT GACGAAGGCC GACGACGCCG ACCGCGCTCG CCTCGCCGCG
TGGGTCGCCA CGCACCAGGC CCACCGGCAC CTCCTGCACA CCGGCCGCGT CGTCCACGCG
GACCAGCCGA ACCCGGCGCT GTGGGTGCAC GGCGTCGTCG CCGCGGACGC CGCCGAGGCG
ATCTTCGCCG TCGTCGCCCT CGCCACCGGT GTCGCGTCCC CGCCCGGCCG GGTCCGGATC
CCCGGTCTCG CGCCCGATGC GCGGTACCGC GTCGCCCCGC TGCCGCCGGG CGACTACGAC
GACCCCCGGG TGCGGTGGCA CCAGCCGTCC TGGTGGGCCG ACGGCGTCAC GCTGGCCGGC
GTCGTCCTCG CCGAGGTCGG GATCCAGGTA CCCGCCCTCC TTCCCGAGCA GCAGGCGCTG
CTCCACCTCG AACGGGTCTG A
|
|---|
| Protein sequence | MSRVVSHPAP SDVPDAVQLS AGGTGVVLDL AGGRLPRVLH WGRDVGRLPP TEIDDLRRAS
VPPQVSGWVD VDVPLGLLPE QSAGWLGTPG LTGHRAGRDF STAFVTTAVD VTEPADDPTI
AHRVRVSARD AVADLDLELD LELTRSGVLR LRARVTNTGD DVFDLATLDL ALPVPTEAAE
LLDLTGRHLR ERSMQRGPFT LGTHLRESRR AAGHDASLVL AAGEPGFGWR HGDVWGVHVA
WSGNTRTYAE RTNHGESFLA GGELLLAGEV RLHRGERYET PWLYASRGTG LDDLAARFHD
FLRARPEHPR SPRPVTLNVW EAVYFDHDLP RLLELARIAA DVGVERYVLD DGWFRHRRND
SAGLGDWYVD EGVWPDGLAP IVDAVHELGM QFGLWFEPEM INPDSDLARA HPEWIMAPGD
RLPVPARRQQ VLNLSIPEAY EHVRSRMLAI LDEYRIDYIK WDHNRPLVEA ATRATGQPAV
HAQTLATYRL IDELKAAHPG LEIESCSGGG GRADLGILAR TDRIWASDCI DPLERQQIEA
GTSLLLPPEL VGSHVASPVS HTTGRSHSLD FRAGTAFFSH LGIEWDVTKA DDADRARLAA
WVATHQAHRH LLHTGRVVHA DQPNPALWVH GVVAADAAEA IFAVVALATG VASPPGRVRI
PGLAPDARYR VAPLPPGDYD DPRVRWHQPS WWADGVTLAG VVLAEVGIQV PALLPEQQAL
LHLERV
|
|---|
| |