| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_2711 |
|---|
| Symbol | |
|---|
| ID | 7860149 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | - |
|---|
| Start bp | 3012369 |
|---|
| End bp | 3013799 |
|---|
| Gene Length | 1431 bp |
|---|
| Protein Length | 476 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 643866808 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_002882718 |
|---|
| Protein GI | 229821192 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.182132 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.33324 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGACGT CCGACAGCGC CAGGACAGCG CCGGCGTTCT CGCGTGCGAC GGCGCTGCTC
GTCGCCGGCA CGTTCTTCAT GGAGATCCTC GACGGGACGA TCCTCGCGCC GGCTGCGCCG
GCGATCGCCG CGGATCTCGG CGTGCGCGCC GTCGACATCA ACGTCGCGAT GACGGCGTAC
CTCCTGACCC TCGCCGTGCT CATCCCCGCG AGCGGCTGGG TCGCCGACCG GTTCGGACCA
CGGCGCGTGT TCATGGTCGC CGTCGCGATC TTCACCGTCG CGTCCGTGGG GTGCGCGCTC
GCGGAGTCGC TGCCGATGCT CGTCGCCGCC CGGGTGCTGC AGGGCGTCGG CGGCTCGCTC
ATGGTCCCCG TCGGCCGCCT CGTCGTGCTG CGGACCACCC CCAAGCACGA CCTCGTCCGC
GCCATCGCGT TCCTCACGTG GCCCGCACTC GTGGCGCCCG TCATCGCCCC GTTCGTGGGC
GGTGTGCTCA GCACGTACGC GTCCTGGCAG TGGATCTTCC TCATCAACGT GCCGCTGGGC
GCGCTCGCCC TGGTCCTGAG CCGGCGGATC CTGCCCGACG TGGCGGGGGA GCGCGGACTG
CACCTCGACC TGACCGGCTT CGCGCTCGTC GCCGTCGCGA CCCTCGCGCT GGTGACCGGG
ATGGAGCAGG TCGGCTCCGG CACCGCCGTC GGATGGCACG TCGCCGTGCT GCTCGCGGTG
GCAGCGATCG TCGCGTTCCT GGCCGTGCGG CACCTGCTCC GGGCGCGGCG ACCCCTGCTC
GACCTGCGCA TCCTGCGCAT CGAGTCCTTC CGTGCGACGG CGGCCGGGGG CTCGGTCTAC
CGCCTCGTCA TCACGGCGAT CCCGTTCCTC CTGGCACTGT TCTTCCAGCT GGGGTTCGGC
TGGACGGCGG CAGCGGCCGG AGCCGTGGTG GTGGCGCTGT TCGTCGGGAA CGTCGCCATC
AAGCCGACGA CGACGCCGCT CATGCGCCGG TTCGGCATCC GGTCGGTGCT GCTCGCCTCG
ATCGCGGGCT CGATCGGGTG CCTCGTGGCC ATCGCGTTCC TCGGGCCGAC GACACCGACC
TGGATCGTGC TCGCCGTGCT GTGCGCGAGC GGCGTCGCCC GCTCGATCGG CTTCACCGCT
TACAACTCGC TCGCGTTCAG CGACGTCGAC GCCGACGACC TGCGCGACGC GAACACGCTC
AACGCGACGG TCCAGGAGCT CGGCTCCGGG CTCGGCATCG CCGTCGGCGC CCTGCTCGTG
CGGCTCGGCG ACGTGGCCGC GCAGGCCGGC TGGTTCGGCG GTGTGCTCGG CGGCCCCGCC
GCCCCCTTCC GGATCGCGTT CCTCGCGCTC GCCGTCGTCA TGCTGCTGCC GGCGGCCGAG
GCGGTGGCGC TCCGCCGCAC CGCCGGGTCG GGCGTCACCG GCGCGCGCTG A
|
|---|
| Protein sequence | MPTSDSARTA PAFSRATALL VAGTFFMEIL DGTILAPAAP AIAADLGVRA VDINVAMTAY
LLTLAVLIPA SGWVADRFGP RRVFMVAVAI FTVASVGCAL AESLPMLVAA RVLQGVGGSL
MVPVGRLVVL RTTPKHDLVR AIAFLTWPAL VAPVIAPFVG GVLSTYASWQ WIFLINVPLG
ALALVLSRRI LPDVAGERGL HLDLTGFALV AVATLALVTG MEQVGSGTAV GWHVAVLLAV
AAIVAFLAVR HLLRARRPLL DLRILRIESF RATAAGGSVY RLVITAIPFL LALFFQLGFG
WTAAAAGAVV VALFVGNVAI KPTTTPLMRR FGIRSVLLAS IAGSIGCLVA IAFLGPTTPT
WIVLAVLCAS GVARSIGFTA YNSLAFSDVD ADDLRDANTL NATVQELGSG LGIAVGALLV
RLGDVAAQAG WFGGVLGGPA APFRIAFLAL AVVMLLPAAE AVALRRTAGS GVTGAR
|
|---|
| |