Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcav_2560 |
Symbol | |
ID | 7857852 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Beutenbergia cavernae DSM 12333 |
Kingdom | Bacteria |
Replicon accession | NC_012669 |
Strand | - |
Start bp | 2846705 |
End bp | 2848378 |
Gene Length | 1674 bp |
Protein Length | 557 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 643866652 |
Product | drug resistance transporter, EmrB/QacA subfamily |
Protein accession | YP_002882568 |
Protein GI | 229821042 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.577395 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.137403 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCCACA CCGCTCCCGC GCCCACGGGG AAACCACTGA TCGTGCTCAA CCAGCGCACG ATCTGGGTGA TCTTCGGCGC CCTCATGGCG AGCATGTTCC TGTCCTCGCT CGACCAGTCG ATCGTCGGCA CGGCGATGCC GACGATCGTG GGCGAGCTGC ACGGCGTCGA GCACCAGGGC TGGGTCGTGA CCGCCTACAT CCTGGCCGTC GCCATCGTCA TGCCGCTGTA CGGCAAGTTC GGTGACATGT GGGGCCGGCG GTGGCCGTTC CTCGTCGCGA TCACGCTGTT CACCGTCGCC TCGGCGGGCG CCGGCTTCGC GAACTCCTTC CCGGAGCTCG TGGCGTGGCG CGGCATCCAG GGCCTCGGCG GCGGCGGACT CATGATCCTG TCGCAGGCGA TCATCGCCGA CATCGTGCCC GCCAAGGACC GCGGCAAGTA CATGGGTCCG ATGGGTGCGC TGTTCGGGAT CGCAGCCGTG GTCGGACCGC TGCTGGGCGG CTGGTTCACC GAAGGGCCCG GCTGGCGCTG GGCGTTCTGG ATCAACGTCC CGATCGGGAT CGCCGCGTTC GCCGTCGCCT GGGTCGCGCT CAAGCTGCCG TCGCACCGGG CAGGCAAGAA GATCGACGTC GCCGGCATCT TCTTCATGGT CGTGGCGACG TCCGGGATCG TCCTCGTGAC CAGCTGGGAG TCCCTGACGT CGCAGCGCGG CTACGACTGG AGCGACCCGT GGCTCATCGG GCTCGTCGCT GCGGTGATCG TCTCGATCGC CGGCTTCATC ATCGCGGAGA ACCGGGCAGA GGAGCCGCTC CTGCCGCTGA AGCTGTTCAA GAACCGCACG TTCACGATCG CCACGCTCAT CGGCCTCGTG CTCGGCATGG GCATGTTCTC GGCGCTGGCG TTCCTCCCGA CGTTCCTGCA GATGTCCACC GGCGCCGGTG TCACCGAGTC CGGATGGCTC ATGCTGCCGA TGATGGCGGG CGTCATGCTC ACGGCCATCG GCTCCGGTAT CGCGATCACG AAGACCGGGA AGTACAAGAT GTTCCCGGTC GTCGGACTCG CGATCACCGT CGCGGGCATG GTCTGGCTGA CCCGGATCAC CGGCGACATG TCGATGCTCC TGTTCGGCGC CATGATCTTC GTGCTCGGCG CCGGCATGGG TCTCGTGATG CAGACGATCG TGCTCGCCGT GCAGAACTCC GTCGACCCGC ACGAGATCGG CACAGCGACC AGCGCGAACA ACTTCTTCCG CGAGATCGGG GCGGCGGTCG GCGTCGCGCT GTTCAGCACG ATCTTCACGT CGCGGCTGAC GGACAACCTC GGGGAGGTCT TCGCCGACCT CCCGCCCGGG ACCGTGCCCG AGGGCGCCGA CGGTGCGTCG CTGACCCCGG ACGTCGTGAA GGCCCTGCCG GAGCCGATCC ACACCGGCGT CGTCGACGCG TTCACCGACG CTCTCGCACC CTCGTTCTGG TACCTCATCC CGCTCGTCGT GCTCGGCTTC GTGCTGGCGC TGTTCCTGCG GGAGATCAAG CTCTCCGACA CCGCGGGGAT GGTGGCCCGC GGCGAGGCGG TCGTGGAGGG CGACGAGCTC GACGTCGTGG CCGGCGACGC GGGGCGGTCC GGTGAGCCGG GAGACGGCGA CCCGCTCGCG GAACGCGAGC CCGCGCGTCA GTAG
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Protein sequence | MSHTAPAPTG KPLIVLNQRT IWVIFGALMA SMFLSSLDQS IVGTAMPTIV GELHGVEHQG WVVTAYILAV AIVMPLYGKF GDMWGRRWPF LVAITLFTVA SAGAGFANSF PELVAWRGIQ GLGGGGLMIL SQAIIADIVP AKDRGKYMGP MGALFGIAAV VGPLLGGWFT EGPGWRWAFW INVPIGIAAF AVAWVALKLP SHRAGKKIDV AGIFFMVVAT SGIVLVTSWE SLTSQRGYDW SDPWLIGLVA AVIVSIAGFI IAENRAEEPL LPLKLFKNRT FTIATLIGLV LGMGMFSALA FLPTFLQMST GAGVTESGWL MLPMMAGVML TAIGSGIAIT KTGKYKMFPV VGLAITVAGM VWLTRITGDM SMLLFGAMIF VLGAGMGLVM QTIVLAVQNS VDPHEIGTAT SANNFFREIG AAVGVALFST IFTSRLTDNL GEVFADLPPG TVPEGADGAS LTPDVVKALP EPIHTGVVDA FTDALAPSFW YLIPLVVLGF VLALFLREIK LSDTAGMVAR GEAVVEGDEL DVVAGDAGRS GEPGDGDPLA EREPARQ
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