| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_2500 |
|---|
| Symbol | |
|---|
| ID | 7857792 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | - |
|---|
| Start bp | 2794365 |
|---|
| End bp | 2795549 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 643866596 |
|---|
| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| Protein accession | YP_002882512 |
|---|
| Protein GI | 229820986 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.220346 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.716688 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGCGC GCACCGTCGT CCTCCTCGGT TCCACCGGTT CGATCGGGAC CCAGGCGCTC
GACGTCGTCG CGGCGGCGCC AGGACGGTTC CAGGTGGTGG GGCTCGCCGC CGGCGGGAGC
GACCTGGAGC TGCTCGCGCG GCAGGCGGTC GCTCACGACG TGCCGGTCGT CGCCGTCGCC
GCCGGCGAGC AGGACGACGT CGCCGCGGCG ATCCGCGCGG CCGGCGGCCG CCGGACGGAG
GTCCTCACCG GCCCGGGAGC CGCCGCCGAC CTCGCCGGGC GCGGCGCCGA CGTCGTGCTC
AACGGGATCA CGGGGTCCGT CGGGCTCGCG CCGACGCTCG CGGCGCTCGA GGCGGGTTCG
ACGCTCGCGC TCGCGAACAA GGAGTCGCTC GTGGCGGGCG CCGCGCTGGT GCGGGCCGCC
CAGCAGCGCG CCGACCAGAT CGTGCCGGTC GACTCGGAGC ACTCGGCCAT CGCGCAGGCG
CTGCGGTCCG GAGCGCGGTC CGAGGTCGCG CGGCTCGTGC TCACGGCCTC GGGTGGGCCG
TTCCGCGGCT GGTCGCGCGA GCAGATGGCC GGCGTGACGC CCGAGCAGGC GCTGGCTCAC
CCCACCTGGG CGATGGGGCC GGTCGTCACC ACGAACTCCG CGACGCTCAT GAACAAGGGC
CTCGAGCTCA TCGAGGCGCA CGTCCTGTTC GACGTGCCGG TCGCGGACAT CACCGTCGTC
GTGCACCCGC AGTCGGTCGT CCACTCGATG GTCGAGTTCG TGGACGGGTC GACGATCGCC
CAGGCATCCC CACCGGACAT GCGGCTGCCG ATCGCGCTCG GCCTCGCCTG GCCCGACCGG
GTGCCCGGTG CGGCGTCGCC GTGCCGCTGG GACGCCGCGA CGTCGTGGAC GTTCGAGCCG
GTCGACGACG CCGCGTTCCC GGCTCTCGAC CTCGCGCGTG AGGCGGTGAA GGCGTCGCCG
CTGCACCCGG CCGTGCTCAA TGCCGCGAAC GAGGAGGCGG TCGCGGCGTT CCTCGACGGG
CGCCTGCCGT TCCTCGACGT CGTCGGGACT GTCGCCCGCG TGCTGGGGGA GTACCCGGAT
CCGCCCGACG GCGCGCTGTC GCTCGAGGGC GTCCAGGCCG CGGAGGCGTG GGCACGAGCG
CGGTCGCGGG CGCTCGTCGC CGACGGACCC TCGCGGGAGC GCTGA
|
|---|
| Protein sequence | MSARTVVLLG STGSIGTQAL DVVAAAPGRF QVVGLAAGGS DLELLARQAV AHDVPVVAVA
AGEQDDVAAA IRAAGGRRTE VLTGPGAAAD LAGRGADVVL NGITGSVGLA PTLAALEAGS
TLALANKESL VAGAALVRAA QQRADQIVPV DSEHSAIAQA LRSGARSEVA RLVLTASGGP
FRGWSREQMA GVTPEQALAH PTWAMGPVVT TNSATLMNKG LELIEAHVLF DVPVADITVV
VHPQSVVHSM VEFVDGSTIA QASPPDMRLP IALGLAWPDR VPGAASPCRW DAATSWTFEP
VDDAAFPALD LAREAVKASP LHPAVLNAAN EEAVAAFLDG RLPFLDVVGT VARVLGEYPD
PPDGALSLEG VQAAEAWARA RSRALVADGP SRER
|
|---|
| |