| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_2399 |
|---|
| Symbol | dnaE |
|---|
| ID | 7858952 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | - |
|---|
| Start bp | 2684874 |
|---|
| End bp | 2688446 |
|---|
| Gene Length | 3573 bp |
|---|
| Protein Length | 1190 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643866495 |
|---|
| Product | DNA polymerase III subunit alpha |
|---|
| Protein accession | YP_002882411 |
|---|
| Protein GI | 229820885 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.351088 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.331114 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGTCCG CTGCACCTGG ATCCGACTTC GTCCATCTCC ACGTGCACAC GGACTACTCG
ATGCTCGACG GCGCGGCCCG GGTGCCCGAT CTCGTCGCCG AGGTCAAGGC GCAGGGGCAG
AGCGCCGTGG CCATCACCGA CCACGGGTAC CTGTTCGGTG CGTACGACTT CTGGAAGCGG
GCGCGCGCCG CGGGCATCAA GCCGATCATC GGCCTGGAGG CGTACGTCAC ACCCGGCACG
GCGCGGCAGG ACCGTTCGAG GGTGCGCTGG GGTGAGCGCG ACCAGGTGGG CGACGACGTC
GCGGGCGGCG GTGCGTACAC GCACCTGACC CTCGTCTCCG AGACGACGGC CGGGATGCAC
AACCTGTTCC GGATGGGTTC GCTCGCGAGC CTCGAGGGCT ACTACTTCAA GCCGCGCATC
GACCGCGAGC TGATGACGCG GTACTCGGAC GGGCTCATCG CGTTCTCGGG CTGCCCCTCG
GGGGAGATCC AGACGCGGCT GCGGCTCGGG CAGTGGGACG AGGCGGTGCG TGCCGCCGCG
GAGCTCCAGG ACATCTTCGG CAAGGACAGC TTCTACATCG AGCTCATGGA TCACTCGCTC
GAGCTCGAGA AGCGCGTGGC GAAGCAGCTC ATGGAGCTCG CGGCCCACCT GGGTGCGCCG
TTGGTGGCGA CGAACGACCT GCACTACGTG CGCGACGAGG ACGAGCACGC GCACGAGCTG
CTGCTGTGCG TCCAGTCCAA CTCGCTGATG TCGGACCCGA CGTACGAACA GGGCGGCAAC
CGGTTCGCGC TGTCCGGCGA CGGCTACTAC GTGCGGTCGA GCGCCGAGAT GCGGCGCCTG
TTCGCGGAGC TGCCCGAGGC GTGCGACAAC ACGCTCGCGA TCGCGGAACG CTGTGAGGTG
GAGTTCACCG AGCAGGTCGG GCGGTACATG CCGCACTTCC CGGTGCCGCC CGGCGAGGAC
GAGATCTCGC TGTTCGTCAA GGAGGTCGAG CGCGGCCTCG TCTCGCGGTT CGGCGAGCAC
GTCCCCGAGG ACGTCGCGCA GCAGGCGAAG TACGAGATCG AGGTCATCAC GTCCAAGGGG
TACGCCGGGT ACTACCTCGT GGTCGCTGAC TTCATCAACT GGGCCAAGCG GAACTCCATC
CGCGTCGGCC CCGGCCGGGG GTCGGGTGCC GGCTCCATGG CCGCCTACGC CATGGGCATC
ACGGAGCTCG ACCCGCTGAG CAACGGTCTG ATCTTCGAGC GGTTCCTCAA CCCGGAGCGG
ATGTCGCTGC CCGACTTCGA CATCGACTTC GACGAGCGTC GGCGCGGCGA GGTCATCCGC
TACGTCACCC AGAAGTACGG CGAGGAGAAC GTCGCCTCGA TCGTCACGTA CGGCACGATC
AAGGCGAAGC AGTCGCTCAA GGACTCGGGG CGCGTGCTCG GCTACCCGTT CGCCATGGGG
GAGAAGCTCA CGAAGGCGAT GCCGCCGGCC CTCATGGGCA AGGACGTCAG CCTGAGCGGC
ATCTTCGACC CGGAGGACAA GCGGTACGCG GAGGCGGCAG AGTTCCGCAC GCTGTACGAG
ACCGACCCCG ATGCGCGCAA GGTCACCGAT GCCGCGAAGG GCATCGAGGG CCTCAAACGA
CAGTGGGGCG TCCACGCGGC CGGGATCATC ATCTCGTCCG AGCCGCTGAT CGACGTCATC
CCGATCATGC GGCGCGACTC CGACGGCGCG ATCATCACGC AGATCGACTT CCCGGCCGGG
GAAGACCTCG GCCTGGTGAA GATGGACTTC CTCGGGCTGC GCAACCTCAC GATCCTCGAG
GACGCGCTCG TCAACATCGG CATCAACGGC AAGCCGGACG TCGTCATCGA GGACGTGCCG
CTCGATGACG CCGCGACGTA CGAGCTGCTC GGCCGGGCGG AGACGCTCGG CGTGTTCCAG
CTGGACGGCA GCGGCATGCG GCAGCTCCTG CGCCTCATGC GCCCGGACAA CTTCGAGGAC
ATCTCCGCCG TGGGCGCGCT CTACCGTCCC GGCCCCATGG GTGCGAACTC GCACACCAAC
TACGCCCTGC GCAAGAACGG CCTCCAGGAC ATCGTCCCGA TCCACCCGGA GCTCGCCGGC
CCGCTCGAGG AGGTCCTCGG CCCCACCTAC GGACTCATCG TCTACCAGGA GCAGGTCATG
GCGATCGCCC AGCACCTGGC CGGGTACACG CTCGGCGAGG CCGACCTGCT GCGGCGCGCG
ATGGGCAAGA AGAAGAAGGA GATCCTCGAC AAGGAGTACG TCCCGTTCTC GAACGGGATG
AAGGAGCGCG GGTACTCCGA AGGGGCGATC AAGGCCCTCT GGGACGTGCT GGTCCCGTTC
TCCGACTACG CGTTCAACAA GGCGCACTCG GCGGCGTACG GGCTGATCTC GTACTGGACG
GCGTACCTCA AGGTCAACTA TCGCGTCGAG TACATGGCGG CGCTGCTCAC GTCCACGCGC
GACGACAAGG ACAAGAGCGC CCTCTACCTC AACGAGTGCC GGCACCTGGG CATCACCGTC
CTGCCGCCGG ACGTCAACGA CTCGGCGGCG AACTTCACCC CGGTCGGCGA AGACATCCGG
TTCGGGCTCG CCGCGGTGCG CAACGTCGGG GCGAACGTCG TGGAGGCCAT CGCGAAGGCC
CGCGAGGAGA AGGGGGCGTT CACCTCGTTC ACGGACTTCC TCGACAAGGT GCCGGCCGTC
GTCTGCAACA AGCGGACCAT CGAGTCGCTC GTCAAGGCGG GCGCGTTCGA CGCGCTCGGG
CACACGCGCC GGTCGCTGCT CCTCGTGCAT GAGCAGGCGG TCGACGCCGT GATCGGCGTC
AAGCGCAAGG AGGCGGAGGG GCAGTTCGAC CTGTTCGCCT CCCTCGGCGG CCCGGCGGAC
GACGCCGCGG GGAGCGTCGC GTCGTTCGCC GTCGAGATCC CGGACCTGCC CGAGTGGGAC
AAGAAGCAGA AGCTGAGCTT CGAGCGCCAG ATGCTCGGTC TGTACGTCTC GGACCACCCG
CTCGCCGGCG TCGAGCACGT GCTCACTGCC GCGGCGGACG TCTCCGTCGC GACGCTGCTC
GCCGACGAGG CCCGCCCGGA CGGCTCGACG GTCACGATCG CCGGGCTCAT CACGAGCCTT
CAGGTCAAGG TGTCGAAGCA GGGCAACCCG TGGGCCGCCG TCGTCATCGA GGACCTGGAG
GGCAGCATCG AGGTGATGTT CTTCGGCGAG ACCTACCTCG CGTACTCGAC GGTGCTGGCC
GAGGACACGG TGGTGGTGCT GCGCGGTCGG GTGCGCCGGC GCGACGAGCA GCTCCAGCTG
CAGGCGATGG AGCTGTCGCT GCCCGACCTC GCCGGCGCTG ACACGAGCCC GATGACGCTC
CAGCTGCCCG ACGCCCGGTG CACCCCACCG GTCGTGGAGC GGCTGCGGGA GATCCTCACC
ACGCACCCCG GCGGCACGGA GGTGCACCTG CGGCTCACCA GCCCGGGTCG CGCCACGGTG
CTGCGGCTCG AGGACGCGCT GCGGGTGGAG CGCTCGCCGG CCCTGTACGG CGATCTCAAG
GCGCTGCTCG GCCCGGGGTG CCTCGCCTCG TGA
|
|---|
| Protein sequence | MPSAAPGSDF VHLHVHTDYS MLDGAARVPD LVAEVKAQGQ SAVAITDHGY LFGAYDFWKR
ARAAGIKPII GLEAYVTPGT ARQDRSRVRW GERDQVGDDV AGGGAYTHLT LVSETTAGMH
NLFRMGSLAS LEGYYFKPRI DRELMTRYSD GLIAFSGCPS GEIQTRLRLG QWDEAVRAAA
ELQDIFGKDS FYIELMDHSL ELEKRVAKQL MELAAHLGAP LVATNDLHYV RDEDEHAHEL
LLCVQSNSLM SDPTYEQGGN RFALSGDGYY VRSSAEMRRL FAELPEACDN TLAIAERCEV
EFTEQVGRYM PHFPVPPGED EISLFVKEVE RGLVSRFGEH VPEDVAQQAK YEIEVITSKG
YAGYYLVVAD FINWAKRNSI RVGPGRGSGA GSMAAYAMGI TELDPLSNGL IFERFLNPER
MSLPDFDIDF DERRRGEVIR YVTQKYGEEN VASIVTYGTI KAKQSLKDSG RVLGYPFAMG
EKLTKAMPPA LMGKDVSLSG IFDPEDKRYA EAAEFRTLYE TDPDARKVTD AAKGIEGLKR
QWGVHAAGII ISSEPLIDVI PIMRRDSDGA IITQIDFPAG EDLGLVKMDF LGLRNLTILE
DALVNIGING KPDVVIEDVP LDDAATYELL GRAETLGVFQ LDGSGMRQLL RLMRPDNFED
ISAVGALYRP GPMGANSHTN YALRKNGLQD IVPIHPELAG PLEEVLGPTY GLIVYQEQVM
AIAQHLAGYT LGEADLLRRA MGKKKKEILD KEYVPFSNGM KERGYSEGAI KALWDVLVPF
SDYAFNKAHS AAYGLISYWT AYLKVNYRVE YMAALLTSTR DDKDKSALYL NECRHLGITV
LPPDVNDSAA NFTPVGEDIR FGLAAVRNVG ANVVEAIAKA REEKGAFTSF TDFLDKVPAV
VCNKRTIESL VKAGAFDALG HTRRSLLLVH EQAVDAVIGV KRKEAEGQFD LFASLGGPAD
DAAGSVASFA VEIPDLPEWD KKQKLSFERQ MLGLYVSDHP LAGVEHVLTA AADVSVATLL
ADEARPDGST VTIAGLITSL QVKVSKQGNP WAAVVIEDLE GSIEVMFFGE TYLAYSTVLA
EDTVVVLRGR VRRRDEQLQL QAMELSLPDL AGADTSPMTL QLPDARCTPP VVERLREILT
THPGGTEVHL RLTSPGRATV LRLEDALRVE RSPALYGDLK ALLGPGCLAS
|
|---|
| |