| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_2396 |
|---|
| Symbol | hisD |
|---|
| ID | 7858949 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | - |
|---|
| Start bp | 2682206 |
|---|
| End bp | 2683984 |
|---|
| Gene Length | 1779 bp |
|---|
| Protein Length | 592 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 643866492 |
|---|
| Product | histidinol dehydrogenase |
|---|
| Protein accession | YP_002882408 |
|---|
| Protein GI | 229820882 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0141] Histidinol dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00069] histidinol dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0523225 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.221308 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCCGTTG AACGTGAGAC GCCAGCGCCC CGTGGCCCCC GACGGATCCG GGTCGTCGGC
GCCGCGGGCT CGGGCAAGAC GCACCTGGCG CGGGAGAGTG CGGCGATCCT CGGCGTGCCG
CGCCTGGAGC TCGACGCCGT GTTCTGGGCG GAGGACTGGA CACTGCGCGA CGTCGCCGAG
GCGCGAGAGC AGGTGCAGGA GTTCCTCGCG GCGCACCCCG ACGGGTGGGT GATCGACGGG
AACTGGCGCT CGCGCCTGGA CGGGATGCTC GAGCCCGGCA GCCCGGGCGG CGCGGACGTG
ACCGTGTGGT CGCGAGTACG CCGCACTCAC CGGGGAGCCG GGGTTCGTCC GGCTGTCGGG
GCGGGCCGCG GTGCGGGAGT GGCTCAGCGG ACCGACCGGG ACGCGGTCAC CCTGACCGAG
GCGGGGCCGG CGCTCACTAC ACTCGGCGTC GTGCCCCTGA TCGCCCGTAT CGACCTGCGT
GGCCGCCGTC TCTCCGCCCG TGAGCTGCGA GCGGTGGTCC CGCGCGCGGA GCTGGACGTC
GAGGCTGCGA CCTCCGCCGT CGAACCGATC CTGGCGGACG TGCGCGAACG TGGCGGAGCC
GCGCTGCGTG ACTACGCCGA GCGGTTCGAC GGCGTCCGTC CGGAGCACGT GCGGGTCCCC
GCGCAGGAGC TGGAGCGGGC GCTCGCCTCG CTGGACCCCG CGCTGCGGGA TGCGCTGACG
ACGAGCGCGG CGCGCGTGCG GCAGGGTCAC GAGGCGCAGC TCCCGCCGGC GCGGACGACC
CGGATCGCGC CGGGTGCCGT CGTCCGTCAG CGGTGGGTCC CGGTCCGCCG CGTCGGGCTG
TACGTGCCTG GCGGGCTCGC CCTGTACCCC TCCAGCGTGG TGATGAACGT CGTGGCGGCG
CAGGTCGCCG GCGTCGAGGC GCTCGCCGTC GCGAGCCCGC CGCAGAAGGA GAACGGCGGC
CTGCCCGATC CGGGCGTGCT GGCCGCCTGC GCCCTCCTCG GCGTGGACGA GGTCTACGCC
GTGGGCGGCG CCCAGGCCAT CGCGATGTTC GCGTACGGGG CGACGGGCTC GGAGGACGTC
GACGGCGAGG TGCTGTGCGA GCCGGTCGAC GTCGTCACCG GCCCCGGCAA CGTGTACGTG
GCCGCCGCGA AGCGCGCCGT CCGCGGCGTC GTCGGCATCG ACGCGGAGGC CGGACCCACG
GAGATCGCGA TCCTCGCGGA TGCCGGCGCC GACCCGGATC ACGTGGCCGC CGACCTCGTC
TCGCAGGCCG AGCACGATCC GAACGCCGCC GCGGTGCTGG TGACCGACTC GCCGGAGCTG
GCCGACGCCG TCGACGACGC CCTCGAGGCG CGCGTCTCGG CGACGAAGCA CTCCGAACGG
GTGCGGGCGG CGCTCGGCGG TCCGCAGTCG GCCGTCGTGC TCGTCGACGA CCTGGAGTCG
GGGCTGGACG TCGTCGACGC CTACGCGGCC GAGCACCTCG AGATCCAGAC GATCGACGCC
GCCGAGCGCG CCGAGCGCGT CCACAACGCC GGTGCGGTGT TCGTCGGCCC GTACTCGCCC
GTGTCGCTCG GCGACTACCT CGCCGGCTCG AACCACGTGC TCCCGACCGG TGGGTGCGCG
CACTTCGCGT CCGGTCTCGG CGTCATGAGC TTCCTCAAGT CGGTCCAGGT GATCGAGTAC
ACCCGGGAGG CGCTCGCGGA GGTCACGCCG GCGCTGTCCG TGCTCGCCGA CGCCGAGGAC
CTCCCCGCGC ACGGCGAGGC GGCACGCGCG CGCACCTGA
|
|---|
| Protein sequence | MPVERETPAP RGPRRIRVVG AAGSGKTHLA RESAAILGVP RLELDAVFWA EDWTLRDVAE
AREQVQEFLA AHPDGWVIDG NWRSRLDGML EPGSPGGADV TVWSRVRRTH RGAGVRPAVG
AGRGAGVAQR TDRDAVTLTE AGPALTTLGV VPLIARIDLR GRRLSARELR AVVPRAELDV
EAATSAVEPI LADVRERGGA ALRDYAERFD GVRPEHVRVP AQELERALAS LDPALRDALT
TSAARVRQGH EAQLPPARTT RIAPGAVVRQ RWVPVRRVGL YVPGGLALYP SSVVMNVVAA
QVAGVEALAV ASPPQKENGG LPDPGVLAAC ALLGVDEVYA VGGAQAIAMF AYGATGSEDV
DGEVLCEPVD VVTGPGNVYV AAAKRAVRGV VGIDAEAGPT EIAILADAGA DPDHVAADLV
SQAEHDPNAA AVLVTDSPEL ADAVDDALEA RVSATKHSER VRAALGGPQS AVVLVDDLES
GLDVVDAYAA EHLEIQTIDA AERAERVHNA GAVFVGPYSP VSLGDYLAGS NHVLPTGGCA
HFASGLGVMS FLKSVQVIEY TREALAEVTP ALSVLADAED LPAHGEAARA RT
|
|---|
| |