| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_2014 |
|---|
| Symbol | alaS |
|---|
| ID | 7858634 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | + |
|---|
| Start bp | 2296144 |
|---|
| End bp | 2298834 |
|---|
| Gene Length | 2691 bp |
|---|
| Protein Length | 896 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 643866108 |
|---|
| Product | alanyl-tRNA synthetase |
|---|
| Protein accession | YP_002882031 |
|---|
| Protein GI | 229820505 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0013] Alanyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.226707 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.142525 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCACCG CCGAGATCCG ACGTCGCTAC CTGGACTACT TCGCCGAGCG CGACCACACG
GTCGTGCCCA GCGCCTCGCT CATCTCCGCC GACCCGTCGA TCCTGTTCAC GATCGCCGGC
ATGGTGCCGT TCATCCCGTA CATCGTCGGG ACGGAGCAGG CACCGTACTC GCGTGCGGTG
AGCGTCCAGA AGTGCATCCG GACGAACGAC ATCGAAGAGG TCGGCCGCAC TACCAGGCAC
GGCACGTTCT TCCAGATGAA CGGCAACTTC TCCTTCGGGG ACTACTTCAA GGAGGGTGCC
GTCGAGTTCG CCTGGGAGCT GATGACGAGC TCGCAGGACG ACGGCGGATT CGGCCTGGAC
CCCGACCTGC TCTGGGTCAC GGTGTGGGAG GAGGACGCGG AGACGGCGCG CGTGCTCCGG
GAGGTCATCG ACTTCCCCGC GGAGCGGGTC GTGCCGCTGT CGCGTGCTGA CTCGTTCTGG
GACACCGGCC AGCCGGGTCC CGCCGGCCCG ACGGCGGAGT GGCACCTGGA CCGGGGCGCT
GACCGCGGCC CCGACGGCGG ACCGGCCGTC GACACGGCGG GCGACCGCTA CGTCGAGTTC
TGGAACCTCG TGTTCGACGA GTTCCTCCGC GGTCCCGGCC CCGGCAAGGA CTATCCGCTG
CTCGGCGAGC TGCCGATGAA GAGCATCGAC ACCGGAATGG GTCTCGAGCG CGTCGCGGCG
ATCCTCCAGG GCAAGGACAA CATCTACGAG ATCGACGAGG TGTTCGGCGT CATCGCCCGC
GCCGAGGAGC TCTCCGGCCG CCGGTACGGC GCCTCGCGCG AGGACGACGT ACGGATGCGC
GTCGTCGCCG ACCACGTGCG CTCCGCGATG ATGCTCGTCT CGGACGGCGT GAAGCCGTCG
AACGAGGGCC GCGGGTACGT CCTGCGCCGG CTGCTGCGCC GCAGCGTCCG GGCGATGCGC
CTCCTGGGCG TGACGGATCC CGCGCTGCCC GAGCTGCTCC CGGTGTCGAA GGACGTCATG
AAGGCGTCCT ACCCCGAGCT GGAGGCGGAC TTCGGCCGGA TCTCCACCAT CGTCTACGAC
GAGGAGGACG CGTTCCGGCG CACGCTCACC TCGGGAACGA CGATCCTCGA CACGGCCGTG
CGCCGGCTCA AGGAGAGCGG CGGCTCCCAG CTGGGCGGCG AGCAGGCGTT CGCGCTGCAC
GACACGTACG GCTTCCCGAT CGACCTCACG CTCGAGATGG CGGCCGAGCA GGGCGTGAGC
GTCGACGAGG AGGCGTTCCG GCGCCTCATG GGGGAGCAAC GCGCCCGGGC ACGGGCCGAC
GCCCTCGCCA AGCGCAGCGG CCACGCCGAC ACGAGCGTGT ACCGCGACAT CGCGGGTTCC
CTGCCCGCAC CGGTGAGCTT CCTCGGATAC ACCGACGCCG AGGCGCGGGT GGCCGTCGTC
GGCCTCCTCG TCGACGGCGT GCCCGCCCCA GCGGCGCAGG CGCCCGCCGA GGTCGAGGTC
GTGCTCGACC GCACGCCCTT CTACGCCGAG GCGGGCGGCC AGCTCGCAGA CCAGGGCCAG
ATCGTCCTCG ACGACGGCGC GGTGGTCGAG GTCGACGACG TCCAGGCTCC GATCAAGGGC
TTGTCGGTGC ACCGCGGCCG GCTCGTCGAG GGCGTGCTGG GGCTGGGCTC GTCGGGCGTC
GCGTCGATCG ACACGGCCCG GCGGCGAGCG ATCGCGCGCG CCCACACCGC GACGCACATG
GTGCACAAGG CGATCCGCGA GCACGTCGGT GAGAGCGCCA CACAGGCGGG CAGCGAGAAC
GCCCCGAGCC GGTTCCGGTT CGACTTCCGT TCGGGTTCGG CGCTGCCGAG CGCGGCGCTC
GCGGAGATCA ACGCGCGTGT CAACACGCTC CTCGCCGACG ATCTCGACGT GACGGACGAG
GTCATGGCTC TCGACGACGC GCGGGCCGCA GGTGCCATGG CGCTGTTCGG GGAGAAGTAC
GGTGACCGTG TGCGCGTCGT GTCGATCGGC GGGGACTGGT CGAAGGAGCT CTGTGCCGGG
ACGCACGTGG CGAGCACCGG GCACCTCGGT CTCGTCACGC TCCTCGGCGA GTCCTCGATC
GGGTCCGGCG TGCGCCGCGT GGACGCTCTC GTGGGCGACG GGGCGTTCGG CTACCAGGCC
AAGGAGCACG CGCTCGTGGG CCAGCTGACG CAGCTCGTCG GGGCGCGCGG CGAGGAGCTG
CCGGAGCGGG TGAGCTCCCT CATGACCCGT CTCAAGGAGG CGGAGCGCGA GATCCAGTCG
TTGCGGCAGG GCCGTCTGCT CGCCGCGGCC GCGTCGCTCG CCGCGTCGGC GGCACTCGTC
TCCGGCGCCC GCGTCGTGAC GCACGACGCC GGCGAGGTCG CCTCCGTCGA CGACGTGCGG
GCGCTCGTCG TCGACCTGCG CGACCGACTG GGCGAGGCGC AGGCCGCCGT CGTCGTCGTC
GGCGGAGTCG CGAAGGGCCG CGCCGTCGTG GTCGCCGCGA CGAACCCGGC CGCGCGCGAG
TCCGGCGTCC GGGCGGGCGA GCTCGTCCGC GTCGCGGCCG GCGCGCTCGG CGGGGGCGGC
GGCGGGCGCG ACGACCTCGC GCAGGGTGGC GGGTCGGACC CGGACCAGAT CCCGGCAGCC
CTCGAGCAGG TGGTCGCGGC CGTGGGACGC ACGTTGGACG AGCGGGGCTG A
|
|---|
| Protein sequence | MRTAEIRRRY LDYFAERDHT VVPSASLISA DPSILFTIAG MVPFIPYIVG TEQAPYSRAV
SVQKCIRTND IEEVGRTTRH GTFFQMNGNF SFGDYFKEGA VEFAWELMTS SQDDGGFGLD
PDLLWVTVWE EDAETARVLR EVIDFPAERV VPLSRADSFW DTGQPGPAGP TAEWHLDRGA
DRGPDGGPAV DTAGDRYVEF WNLVFDEFLR GPGPGKDYPL LGELPMKSID TGMGLERVAA
ILQGKDNIYE IDEVFGVIAR AEELSGRRYG ASREDDVRMR VVADHVRSAM MLVSDGVKPS
NEGRGYVLRR LLRRSVRAMR LLGVTDPALP ELLPVSKDVM KASYPELEAD FGRISTIVYD
EEDAFRRTLT SGTTILDTAV RRLKESGGSQ LGGEQAFALH DTYGFPIDLT LEMAAEQGVS
VDEEAFRRLM GEQRARARAD ALAKRSGHAD TSVYRDIAGS LPAPVSFLGY TDAEARVAVV
GLLVDGVPAP AAQAPAEVEV VLDRTPFYAE AGGQLADQGQ IVLDDGAVVE VDDVQAPIKG
LSVHRGRLVE GVLGLGSSGV ASIDTARRRA IARAHTATHM VHKAIREHVG ESATQAGSEN
APSRFRFDFR SGSALPSAAL AEINARVNTL LADDLDVTDE VMALDDARAA GAMALFGEKY
GDRVRVVSIG GDWSKELCAG THVASTGHLG LVTLLGESSI GSGVRRVDAL VGDGAFGYQA
KEHALVGQLT QLVGARGEEL PERVSSLMTR LKEAEREIQS LRQGRLLAAA ASLAASAALV
SGARVVTHDA GEVASVDDVR ALVVDLRDRL GEAQAAVVVV GGVAKGRAVV VAATNPAARE
SGVRAGELVR VAAGALGGGG GGRDDLAQGG GSDPDQIPAA LEQVVAAVGR TLDERG
|
|---|
| |