| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_2011 |
|---|
| Symbol | rpsD |
|---|
| ID | 7858631 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | + |
|---|
| Start bp | 2294618 |
|---|
| End bp | 2295244 |
|---|
| Gene Length | 627 bp |
|---|
| Protein Length | 208 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 643866105 |
|---|
| Product | 30S ribosomal protein S4 |
|---|
| Protein accession | YP_002882028 |
|---|
| Protein GI | 229820502 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
|---|
| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0658293 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.432018 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCTCCA CGAAGCGCGC GCGCAACCAG GTGCGCCTGT CCCGCGCCCT CGGCCTCCCG
CTGACGCCGA AGGCCGCCAA GTACTTCGAG AAGCGGCCCT ACCCGCCGGG CGAGCACGGT
CGCGCCCGCC GCCGCACCGA GTCCGACTAC GCCGTCCGGC TCAAGGAGAA GCAGCGTCTC
CGCGCCCAGT ACGGCATCCG CGAGGCGCAG CTGCGTCGCG CGTTCGACGA GGCGCGCCGC
GAGGCCGGCC TGACCGGTGA GGCGCTCGTC GAGCTCCTCG AGATGCGGCT CGACGCCCTC
GTGCTGCGGT CCGGCTTCGC CCGCACGATC GCGCAGGCCC GCCAGGCAGT CGTCCACCGC
CACGTCCTCG TCGACGGCAA GATCGTCGAC CGCCCGTCCT TCCGCGTGAA GCCGGGCCAG
GTCATCCAGG TCAAGCCGCG CAGCCAGGCC CGCACCCCGT TCCAGGTGGC CGCCGCCGGC
GCTCACCGCG ACGTGCTGGC CCAGGTGCCG GAGTACCTGG ACGTGTCGCT CGAGAAGCTG
CGTTCCGAGC TCGTGCGCCG CCCGAAGCGA GCCGAGGTCC CCGTGACCGC CGACGTCCAG
CTGATCGTCG AGTGGTACGC GCGCTGA
|
|---|
| Protein sequence | MSSTKRARNQ VRLSRALGLP LTPKAAKYFE KRPYPPGEHG RARRRTESDY AVRLKEKQRL
RAQYGIREAQ LRRAFDEARR EAGLTGEALV ELLEMRLDAL VLRSGFARTI AQARQAVVHR
HVLVDGKIVD RPSFRVKPGQ VIQVKPRSQA RTPFQVAAAG AHRDVLAQVP EYLDVSLEKL
RSELVRRPKR AEVPVTADVQ LIVEWYAR
|
|---|
| |