| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_1958 |
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| Symbol | |
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| ID | 7858351 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Beutenbergia cavernae DSM 12333 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012669 |
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| Strand | + |
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| Start bp | 2231991 |
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| End bp | 2233922 |
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| Gene Length | 1932 bp |
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| Protein Length | 643 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 643866048 |
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| Product | deoxyxylulose-5-phosphate synthase |
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| Protein accession | YP_002881975 |
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| Protein GI | 229820449 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.911058 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000518152 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCGGACG AGCCCAGGAT CCTGCCGACG GTGACGACCC CACGGGACCT CCGTCGGTTG
AAGCCGGCGC AGCTCGACGC TCTCGCCGCG GAGATCCGTG ACTTCCTCGT CACCGAGGTC
TCGAAGACCG GGGGGCACCT CGGGCCGAAC CTCGGCGTCG TGGAGCTGAC CATCGCGCTG
CACCGCGTCT TCTCCTCCCC GACCGACCGC CTCGTCTTCG ACACCGGGCA CCAGGCGTAC
GTGCACAAGC TCCTGACCGG GCGGCAGGAC TTCTCGCGGC TGCGCGGCCG CGGCGGGCTG
TCCGGCTACC CCAGCAGGGC GGAGTCGGAC CACGACGTCG TCGAGAACTC CCACGCGTCA
GCGGCGCTGT CGTGGGCCGA CGGGATCGCC CGGGCGAACC AGGTCGCGGG CCTGCGGGAC
CGCCACGTCG TCGCCGTCGT CGGCGACGGC GCGCTCACCG GGGGCATGGC CTGGGAGGCG
CTCAACAACA TCTCCTCGGG GCAGGACCGC CGCCTCGTCG TCGTCGTGAA CGACAACGGC
CGCTCGTACT CCCCGACGAT CGGTGGCCTG GCGCAACAGC TCGACACGCT GCGCACGACC
CAGAGCTACG AGCGGGTGCT CGCCCTCGGC AAGGCGACCC TGCAGCGGGG TGGGCCGCCC
GGGCGGTTCG CGTACGACGC CCTGCACGGG CTCAAGAAGG GCCTCAAGGA CGTCGCCCGC
CCGCAGGGGC TGTTCGAGGA CCTCGGGATC AAGTACGTAG GCCCCGTGGA CGGGCACGAC
CGGGTGATGG TCGAGCACGC GCTGCGCCGG GCCAAGGCGT TCGACGGCCC GGTCATCGTG
CACGTCATCA CGGAGAAGGG GCGCGGGTAC ACGCCCGCGG AGGAGGACGT CGCGGACCGG
TTCCACGCCG TCGGGAAGAT CCACCCCGAG ACGGGGCTGC CCGTCGCGCC GTCGCGGTTT
GGGTGGACGG CCGTGTTCGC CGACGAGATC GTGGCGATCG CGCGCCAGCG CAGCGACGTC
GTCGGCGTCA CGGCCGCCAT GCTGCACCCG GTGGGCCTCG CGCCGATGGC GGAGGAGTTC
CCGGACCGCG TGTTCGACGT CGGGATCGCC GAGCAGCACG CGGTCACCTC GGCGGCGGGG
ATGGCGTTCG CCGGCCTGCA CCCGGTGATC GGGCTGTACG CGACGTTCCT CGGACGGGGG
TTCGACCAGC TCCTCATGGA CGTGGGCCTG CACAAGGCCG GCGTCACGTT CGTGCTCGAC
CGCGCCGGAC TCACGGGCGA GGACGGCGCG AGCCACAACG GGATGTGGGA CATCGCGATG
ACCTCGATCG TCCCGGGGCT GCGGCTCGCC GCGCCGCGCG ACGAGACGAC GTTGCGCGAG
GAGCTGCGCG AGGCGGTCGC CGTCGACGAC GCGCCGACCG TGCTGCGGTA CCCGAAGGGC
GCGCTGCCCG AGGCGTTGCC GGCGGTGCAG CGGGTCGGGG GGGCGTACGG CCCGGACGTG
CTCGCACGCC ACGCCGGCGA CGGCGGCGCC CGGGTTCTCG TGGTGGGCGT CGGGGCGTTC
GCCGCCTGCG CCGTGGAGGT GGGGGAGCGG CTGGCGCAGC ACGGCATCGG CGGCACCGTC
GTGGACCCGC GCTGGGTGCT TCCGGTGGGC TCCGAGCTGC TCGAGCTCGC CCAGGGTCAC
GACCTCGTGG TCACCGTGGA GGACGGGCTC GTGACGGGCG GCGCCGGCTC GCACCTGCGG
GACGCGCTGG CCGCGGCCGG GACGCACGTG CCGGTGCAGT CGCACGGCAT TCCCCGGACC
TACCTCGAGC ACGCCTCCCG CGCGGAGCTC GTCGCGGAGC TGGGGCTGCG CCCGGCCGAC
GTGGCTCGCG AGGCGGCGTC CGCCGTCGCG CACCTGACCG GTGCGACGGA GCCGGCCACG
ATCGACCGCT GA
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| Protein sequence | MPDEPRILPT VTTPRDLRRL KPAQLDALAA EIRDFLVTEV SKTGGHLGPN LGVVELTIAL
HRVFSSPTDR LVFDTGHQAY VHKLLTGRQD FSRLRGRGGL SGYPSRAESD HDVVENSHAS
AALSWADGIA RANQVAGLRD RHVVAVVGDG ALTGGMAWEA LNNISSGQDR RLVVVVNDNG
RSYSPTIGGL AQQLDTLRTT QSYERVLALG KATLQRGGPP GRFAYDALHG LKKGLKDVAR
PQGLFEDLGI KYVGPVDGHD RVMVEHALRR AKAFDGPVIV HVITEKGRGY TPAEEDVADR
FHAVGKIHPE TGLPVAPSRF GWTAVFADEI VAIARQRSDV VGVTAAMLHP VGLAPMAEEF
PDRVFDVGIA EQHAVTSAAG MAFAGLHPVI GLYATFLGRG FDQLLMDVGL HKAGVTFVLD
RAGLTGEDGA SHNGMWDIAM TSIVPGLRLA APRDETTLRE ELREAVAVDD APTVLRYPKG
ALPEALPAVQ RVGGAYGPDV LARHAGDGGA RVLVVGVGAF AACAVEVGER LAQHGIGGTV
VDPRWVLPVG SELLELAQGH DLVVTVEDGL VTGGAGSHLR DALAAAGTHV PVQSHGIPRT
YLEHASRAEL VAELGLRPAD VAREAASAVA HLTGATEPAT IDR
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