| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_1917 |
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| Symbol | |
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| ID | 7858310 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Beutenbergia cavernae DSM 12333 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012669 |
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| Strand | + |
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| Start bp | 2184250 |
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| End bp | 2185749 |
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| Gene Length | 1500 bp |
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| Protein Length | 499 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 643866008 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_002881935 |
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| Protein GI | 229820409 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0130031 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCCGAGC TCCCTCGCGA GTTCCAGCAC GCCGCTCTCC AGGACGTCGT CCGCCACGGC
CGTGTGCACG GGCGGGTCGC CGCTGAGGAG TTCCAGGCGG CGTGCTCCAG CGCGCACGTG
GCGCCCCGTC GCCTCGCGAC GGTGCTGCGC GCGTTCGTCT CGCTCGGGAT CGAGATCAGC
GCCCCCGCTG CCCCCGCAGC CGCGGCGGCC CGGTCCACGA CGTCGAGCAC CGCCGTCGTC
GAGGACGCGC CGGCCCCGAA GCGCGCTCGC GCCACGAAGA CCAGCTCTGC GGCGTCCGCC
AAGGCCGCGC CGAAGAAGGG CGCCGTCAAG CCCGCCGCCA AGACGACCTC GAAGACGAAG
GCCGCCCCCG CCCCGAGCGA CGAGACCGAG GAGGTCGAGC TCGAGGAGGT CGACGTCGCC
GAGGACGCGG TGGACGTCGA CGACGCGACC GAGGCGACCG AGGGCGACGC CGCCGAGGGC
GGCGCGGCGA AGACCGCGAA GACCGGCACG GACGAGACCG AGGACAAGGG ATTCGTCTAC
TCCGACGCGG ACGACGACGA CGCGCCGGCG CAGCAGGTGG TCACGGCGGG TGCGACTGCC
GACCCCGTGA AGGACTACCT CAAGCAGATC GGCAAGGTCG CGCTGCTGAA CGCGGAGCAG
GAGGTCGAGC TCGCGAAGCG CATCGAGGCC GGCCTGTTCG CGGAGGAGAC GCTCGCCGCG
GGCGGCTCGA TGGAGTTCAA GCTGCGCCGC GAGCTCGAGT GGATCGCCGC CGACGGGCGT
CGGGCGAAGA ACCACCTGCT CGAGGCGAAC CTGCGCCTCG TGGTCTCCCT GGCCAAGCGC
TACACCGGCC GCGGGATGCT GTTCCTGGAC CTCATCCAGG AGGGCAACCT CGGTCTGATC
CGCGCCGTCG AGAAGTTCGA CTACACCAAG GGCTACAAGT TCTCGACGTA CGCCACGTGG
TGGATCCGGC AGGCGATCAC CCGCGCGATG GCGGACCAGG CGCGCACCAT CCGCATCCCG
GTGCACATGG TCGAGGTCAT CAACAAGCTC GCCCGCGTGC AGCGGCAGAT GCTCCAGGAC
CTGGGCCGCG AGCCCACCCC GGAGGAGCTC GCCAAGGAGC TCGACATGAC CCCGGAGAAG
GTCGTCGAGG TCCAGAAGTA CGGCCGCGAG CCGATCTCGC TGCACACCCC GCTCGGCGAG
GACGGCGACA GCGAGTTCGG TGACCTCATC GAGGACTCCG AGGCCGTGGT GCCGGCCGAC
GCCGTGAGCT TCACGCTCCT GCAGGAGCAG CTACACGCGG TGCTCGACAC GCTCTCGGAG
CGCGAGGCCG GCGTCGTCTC GATGCGGTTC GGCCTGACCG ACGGCCAGCC GAAGACGCTC
GACGAGATCG GCAAGGTCTA CGGCGTCACG CGCGAGCGGA TCCGCCAGAT CGAGTCCAAG
ACGATGTCGA AGCTGCGTCA CCCGTCGCGG TCGCAGGTTC TGCGCGACTA CCTGGACTGA
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| Protein sequence | MPELPREFQH AALQDVVRHG RVHGRVAAEE FQAACSSAHV APRRLATVLR AFVSLGIEIS
APAAPAAAAA RSTTSSTAVV EDAPAPKRAR ATKTSSAASA KAAPKKGAVK PAAKTTSKTK
AAPAPSDETE EVELEEVDVA EDAVDVDDAT EATEGDAAEG GAAKTAKTGT DETEDKGFVY
SDADDDDAPA QQVVTAGATA DPVKDYLKQI GKVALLNAEQ EVELAKRIEA GLFAEETLAA
GGSMEFKLRR ELEWIAADGR RAKNHLLEAN LRLVVSLAKR YTGRGMLFLD LIQEGNLGLI
RAVEKFDYTK GYKFSTYATW WIRQAITRAM ADQARTIRIP VHMVEVINKL ARVQRQMLQD
LGREPTPEEL AKELDMTPEK VVEVQKYGRE PISLHTPLGE DGDSEFGDLI EDSEAVVPAD
AVSFTLLQEQ LHAVLDTLSE REAGVVSMRF GLTDGQPKTL DEIGKVYGVT RERIRQIESK
TMSKLRHPSR SQVLRDYLD
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